Anderson M M - OmicsDI

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Unknown (18893)
Proteomics (340)
Transcriptomics (217)
Genomics (170)
Metabolomics (114)
Genomic (8)
Models (6)
Clinical (1)

Organisms

Homo sapiens (193)
Mus musculus (61)
Euphorbia esula (9)
Rattus norvegicus (9)
Gallus gallus (6)
Candida albicans (3)
Arabidopsis thaliana (3)
Leishmania major (2)
Coprinopsis cinerea (2)
Bacillus anthracis (2)
Schizosaccharomyces pombe (2)
Ovis aries (2)
Sus scrofa (2)
Eukaryota (1)
Rattus (1)
Aedes albopictus (1)
Ehrlichia chaffeensis str. Arkansas (1)
Mustela putorius furo (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Staphylococcus aureus subsp. aureus Mu50 (1)
Macaca fascicularis (1)
Schistosoma mansoni (1)
Medicago truncatula (1)
Aedes aegypti (1)
Salmo salar (1)
Bos taurus (1)
Glycine max (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Escherichia coli (1)

Organisms

Homo sapiens (57)
Mus musculus (14)
Escherichia coli (2)
Streptococcus sp. 'group A' (1)
Mycobacterium lepromatosis (1)
Euphorbia esula (1)
gut metagenome (1)
Streptococcus pyogenes (1)

Repository

pride (267)
biostudies-arrayexpress (233)
ENA (87)
EGA (66)
MetaboLights (65)
MassIVE (63)
GNPS (48)
dbGaP (8)
BioModels (6)
jPOST (4)
PanoramaPublic (4)
geo (3)
MetabolomicsWorkbench (1)
PAXDB (1)

Tissue

Blood (56)
Cell culture (30)
Epithelial cell (18)
T cell (18)
B cell (13)
Skeleton (10)
Kidney (10)
Permanent cell line cell (7)
Blood plasma (6)
Neutrophil (6)
Bone marrow (5)
Heart (5)
Brain (5)
Liver (5)
Monocyte (4)
Platelet (4)
Synovial tissue (3)
Caput epididymis (3)
CD8-positive (3)
Fungal cell (3)
Cell suspension culture (3)
Embryo (3)
Whole body (3)
Spleen (3)
Leaf (3)
Erythrocyte (3)
Blood cell (3)
Hyphal cell (2)
Eosinophil (2)
Blood (1)

Disease

Disease free (61)
Wounds and Injuries (11)
Breast cancer (7)
Acute leukemia (5)
Multiple myeloma (3)
Cervix carcinoma (3)
Cardiovascular system disease (3)
Type 1 diabetes mellitus (2)
Prostate adenocarcinoma (2)
Lung cancer (2)
Lysosomal storage disease (2)
Amyotrophic lateral sclerosis (2)
COVID-19 (2)
T. circumcincta infection (1)
Myelogenous leukaemia (1)
Normal (1)
Gastrointestinal Neoplasms (1)
Cancer (1)
Mucinous pancreas adenocarcinoma (1)
Hepatitis B (1)
Amyloidosis (1)
Niemann-Pick disease type C2 (1)
Hepatitis (1)
Colorectal carcinoma (1)
Sensory peripheral neuropathy (1)
Brain glioma (1)
Barrett's esophagus (1)
Triple-receptor negative breast cancer (1)
Swine influenza (1)
Peritoneal mesothelioma (1)

Technology Type

Mass Spectrometry (268)
Shotgun proteomics (114)
Top-down proteomics (61)
Mass spectrometry (45)
Bottom-up proteomics (36)
Affinity purification coupled with mass spectrometry proteomics (35)
Data-dependent acquisition (19)
NMR spectroscopy (15)
Gel-based experiment (11)
Data-independent acquisition (7)
Mass spectrometry assay (6)
SWATH MS (6)
HDMSE (4)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina 610K Quad, Illumina 1.2M (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2500 (1)
Affymetrix 6.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
ESI (1)
Mass spectrometry imaging (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (46)
GC-MS (21)
GC MS (12)
LTQ Orbitrap (6)
Illumina HiSeq 2500 (5)
Orbitrap Fusion Lumos (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
Q Exactive (4)
Q Exactive Plus (3)
G2505B DNA microarray scanner (2)
Illumina HiSeq 2000 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
LTQ (2)
10X Genomics Chromium (1)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
N/A (1)
6110 Quadrupole LC/MS (1)
LTQ Orbitrap Velos Pro (1)
Agilent GC-MS (1)
Q-exactive HF-x (1)
Agilent GC/MSD 5975C (1)
NHMFL 21T FT-ICR-MS (1)
Q-Exactive Plus with 11-meter SLIM (1)
Exactive (1)
LTQ Velos (1)
Orbitrap Astral (1)
TripleTOF 5600 (1)

Publication Date

2022 (89)
2016 (62)
2015 (48)
2023 (44)
2021 (42)
2024 (39)
2013 (39)
2017 (35)
2026 (33)
2020 (33)
2019 (28)
2018 (28)
2014 (28)
2012 (28)
2025 (27)
2010 (23)
2011 (19)
2008 (19)
2009 (13)
2007 (9)
2005 (2)
2006 (1)

UNIPROT ID/AC

Q01094 (1)
P05230 (1)
P11362 (1)
P06400 (1)
P24864 (1)
P24385 (1)
P15056 (1)
P04049 (1)
P28482 (1)
SPRTN_MOUSE (1)
BATF_MOUSE (1)
S35F2_MOUSE (1)
CCND2_MOUSE (1)
JAML_MOUSE (1)
I18RA_MOUSE (1)
CENPS_MOUSE (1)
DEFI8_MOUSE (1)
CF97D_MOUSE (1)
RNF4_MOUSE (1)
TM154_MOUSE (1)
TBRG1_MOUSE (1)
S18L2_MOUSE (1)
ARMC7_MOUSE (1)
TAF13_MOUSE (1)
ELK4_MOUSE (1)
ZBTB1_MOUSE (1)
MOT7_MOUSE (1)
LY65B_MOUSE (1)
GFI1_MOUSE (1)
ZDH15_MOUSE (1)

CHEBI ID

CHEBI:30769 (26)
CHEBI:17568 (23)
CHEBI:15428 (20)
CHEBI:16704 (20)
CHEBI:16737 (20)
CHEBI:15354 (20)
CHEBI:15741 (19)
CHEBI:17750 (19)
CHEBI:16449 (19)
CHEBI:16919 (19)
CHEBI:17895 (19)
CHEBI:17368 (19)
CHEBI:25017 (18)
CHEBI:15891 (18)
CHEBI:32816 (18)
CHEBI:16414 (18)
CHEBI:16335 (17)
CHEBI:18019 (17)
CHEBI:17295 (17)
CHEBI:17596 (17)
CHEBI:18257 (16)
CHEBI:27266 (16)
CHEBI:27897 (16)
CHEBI:17191 (16)
CHEBI:17992 (15)
CHEBI:18237 (15)
CHEBI:24898 (15)
CHEBI:17203 (15)
CHEBI:18050 (15)
CHEBI:46195 (1)

Metabolite Name

Glycine (16)
Uracil (15)
Choline (15)
Creatinine (15)
Citric acid (14)
Xanthine (14)
Creatine (14)
L-Tyrosine (14)
Hypoxanthine (14)
L-Valine (13)
L-Isoleucine (13)
L-Phenylalanine (13)
L-Histidine (12)
L-Leucine (12)
L-Lactic acid (11)
Pyruvic acid (11)
L-Alanine (11)
L-Lysine (11)
Adenosine (11)
L-Glutamine (11)
Uridine (11)
L-Methionine (11)
Inosine (11)
L-Proline (10)
Ornithine (10)
L-Arginine (10)
Succinic acid (10)
Taurine (10)
Uric acid (10)
D-Glucose (9)

First Public Date

2014 (26)
2025 (14)
2022 (9)
2024 (7)
2023 (7)
2021 (5)
2020 (4)
2026 (3)
2017 (3)
2013 (3)
2019 (2)
2016 (2)
2018 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (3)
Physiologically based pharmacokinetic model (1)

Study status

Completed (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (55)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (4)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (4)
The University of Texas MD Anderson Cancer Center (3)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, UK (3)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
Department of Biochemistry, University of Missouri (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (2)
Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia (2)
Penn State College of Medicine, Hershey, PA, USA (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
University of Wisconsin School of Medicine and Public Health (2)
Institute of Ageing and Chronic Disease, University of Liverpool, United Kingdom (2)
CRUK Beatson Institute (2)
Reproductive Science Group, Priority Research Centre for Reproductive Science School of Environmental and Life Sciences College of Engineering, Science and Environment (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
CSIRO Agriculture, Western Australia (1)
Dept. of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University (1)
Anesthesiology & Perioperative Medicine Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Institute of Integrative Biology, University of Liverpool, Liverpool, UK (1)
Dept. Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia. (1)

Keyword

Gastrointestinal Cancers (1)
Gastro-Intestinal Chemotherapy (1)
M.D. Anderson Symptom Inventory (1)
MDASI-GI (1)
Medical Oncology (1)
GI (1)
Gastrointestinal (1)
Pancreas (1)
Liver (1)
Colorectal (1)
Gastric (1)

IsPrivate

False (6)

Classification

bacteria (5)

Modification

15.994915 (3)
57.021464 (3)
71.037114 (1)
Not available (1)

Study type

Transcription profiling by array (141)
RNA-seq of coding RNA (26)
Comparative genomic hybridization by array (14)
ChIP-seq (12)
Unknown experiment type (5)
RNA-seq of non coding RNA (5)
Methylation profiling by array (4)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
ATAC-seq (2)
Other (2)
DNA-seq (2)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
Interventional (1)

Release Date

2022 (1782)
2023 (1699)
2021 (1687)
2025 (1571)
2024 (1429)
2020 (1389)
2018 (1207)
2019 (1118)
2017 (1075)
2016 (1006)
2015 (954)
2014 (836)
2013 (687)
2012 (565)
2011 (476)
2010 (423)
2009 (353)
2026 (248)
2008 (231)
2007 (108)
2006 (83)
2005 (63)
2004 (32)
2003 (29)
2002 (27)
2001 (17)
2000 (9)
1999 (9)
1998 (8)
1997 (2)

Location

United States (1)

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Psychometric validation of the Chinese version of the M. D. Anderson Symptom Inventory-Head and Neck Module in patients with nasopharyngeal carcinoma.

Not available

S-EPMC9072183 | biostudies-literature

Metabolome analysis reveal key regulatory pathways of feed conversion efficiency of oriental river prawn Macrobrachium nipponense

A total of 445 and 247 differently expressed metabolites (DEMs) were identified in the hepatopancreas and muscle. In addition, 11 KEGG pathways, which mainly include lysine biosynthesis, lysine degradation, aminoacyl-tRNA biosynthesis and purine metabolism, were sign...

2023-02-28 | MTBLS6663 | MetaboLights

Genotype-to-Phenotype Associations in the Aggressive Variant Prostate Cancer Molecular Profile (AVPC-m) Components.

Not available

S-EPMC9265062 | biostudies-literature

Measuring the symptom burden of lung cancer: the validity and utility of the lung cancer module of the M. D. Anderson Symptom Inventory.

Not available

S-EPMC3228083 | biostudies-literature

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

A molecular beacon real-time polymerase chain reaction assay for the identification of M. chitwoodi, M. fallax, and M. minor.

Not available

S-EPMC9994647 | biostudies-literature

Validating M.D. Anderson Symptom Inventory (MDASI-GI) in GI Cancer Patients Under Chemotherapy

The goal of this study is to learn more about the symptoms that may occur in patients with GI cancer. The types of GI cancer being studied are cancers of the stomach, liver, pancreas, colon, and rectum. Researchers want to test a newly-designed questionnaire called the M. D. Anderson Symptom Invento...

2068419 | ecrin-mdr-crc

RNA-seq of Medicago truncatula A17 and the ethylene insensitive sickle mutant interacting with the fungal root pathogen, Rhizoctonia solani AG8

This study compares the response of wild type (A17) and ethylene insensitive mutant (sickle) lines of the model legume Medicago truncatula to infection by the root-infecting necrotrophic fungal pathogen, Rhizoctonia solani AG8 (WAC10335). Two time points were taken, 2 and 7 days after inoculation al...

ORGANISM(S): Medicago truncatula

2017-06-06 | E-MTAB-5473 | biostudies-arrayexpress

Revisiting phosphoregulation of Cdc25C during M-phase induction.

Not available

S-EPMC11743101 | biostudies-literature

Risk of serious toxicity in 1181 patients treated in phase I clinical trials of predominantly targeted anticancer drugs: the M. D. Anderson Cancer Center experience.

Not available

S-EPMC4092254 | biostudies-literature

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