Andrews J J - OmicsDI

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Unknown (3018)
Transcriptomics (64)
Proteomics (47)
Genomics (27)
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Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (42)
Alteromonadales (42)
Candida albicans SC5314 (42)
Canis lupus familiaris (42)
Carya cathayensis (42)
Ectopseudomonas oleovorans CECT 5344 (42)
Ensifer adhaerens (42)
Enterococcus faecalis (42)
Globicatella sanguinis (42)
Halictus scabiosae (42)
Histomonas meleagridis (42)
Human immunodeficiency virus 1 (42)
Listeria monocytogenes (42)
Homo sapiens (35)
Mus musculus (27)
Drosophila melanogaster (12)
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Escherichia coli (2)
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Felis catus (1)
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Tetrahymena thermophila (1)
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Brassica napus (1)
Schizosaccharomyces pombe (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Rattus rattus (1)

Organisms

Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (79)
pride (42)
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Tissue

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Disease

Parkinson's disease (2)
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Technology Type

Mass Spectrometry (42)
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Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (6)
SWATH MS (4)
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Mass spectrometry (2)
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Illumina HiSeq 2500, ILLUMINA (1)
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Instrument Platform

NextSeq 550 (4)
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Thermo ltq (1)
UNKNOWN UNKNOWN (1)
Waters q-tof (1)

Publication Date

2022 (16)
2011 (14)
2010 (13)
2025 (10)
2023 (8)
2013 (8)
2020 (7)
2024 (6)
2018 (6)
2015 (6)
2019 (5)
2009 (5)
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2016 (4)
2012 (4)
2014 (3)
2007 (3)
2006 (3)
2026 (2)
2005 (1)
2008 (1)

CHEBI ID

CHEBI:26271 (2)
CHEBI:22660 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:28044 (2)
CHEBI:27266 (2)
CHEBI:29016 (2)
CHEBI:16704 (2)
CHEBI:15891 (2)
CHEBI:25094 (2)
CHEBI:6650 (2)
CHEBI:18237 (2)
CHEBI:17568 (2)
CHEBI:15741 (2)
CHEBI:15611 (2)
CHEBI:32816 (2)
CHEBI:78320 (2)
CHEBI:18012 (2)
CHEBI:22653 (2)
CHEBI:16449 (2)
CHEBI:27897 (2)
CHEBI:17596 (2)
CHEBI:17368 (2)
CHEBI:77846 (1)
CHEBI:16132 (1)

Metabolite Name

Uracil M+4 (1)
Uracil M+3 (1)
Uracil M+2 (1)
Uracil M+1 (1)
Uracil M+0 (1)
Adenine M+5 (1)
Adenine M+4 (1)
Adenine M+3 (1)
Adenine M+2 (1)
Adenine M+1 (1)
Adenine M+0 (1)
Uridine M+9 (1)
Uridine M+8 (1)
Uridine M+7 (1)
Uridine M+6 (1)
Uridine M+5 (1)
Uridine M+4 (1)
Uridine M+3 (1)
Uridine M+2 (1)
Uridine M+1 (1)
Uridine M+0 (1)
Adenosine M+10 (1)
Adenosine M+9 (1)
Adenosine M+8 (1)
Adenosine M+7 (1)
Adenosine M+6 (1)
Adenosine M+5 (1)
Adenosine M+4 (1)
Adenosine M+3 (1)
Adenosine M+2 (1)

First Public Date

2021 (2)
2022 (1)
2015 (1)

Modelling Approach

Computational model (2)
Ordinary differential equation model (1)

Lab affiliation

Cornell University Department of Microbiology (3)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland (2)
1 Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Spitalgasse 4, A-1090 Vienna, Austria; 2 Department of Neuroscience, Karolinska Institutet, Retzius väg 8, SE-17177 Stockholm, Sweden (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China (1)
1. School of Pharmacy and Bioengineering, Keele University, Keele, Staffordshire, UK 2. Midlands Centre for Spinal Injuries, RJAH Orthopaedic Hospital, Oswestry, Shropshire, UK. (1)
BSRC Mass Spectrometry and Proteomics Facility Biomedical Sciences Research Complex BMS Annexe, North Haugh University of St Andrews St Andrews, Fife KY16 9ST (1)
BSRC, University of St Andrews, UK (1)
Biology University of Minnesota Duluth (1)
Biomedical Sciences Research Complex, University of St Andrews (1)
College of Veterinary Medicine, The state Key Laboratory of Agricultural Microbiology, Cooperative Innovation Center of Substantial Pig Production, Wuhan, 433070, China (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver BC, Canada (1)
Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, United Kingdom (1)
Hong Kong Baptist University (1)
Imperial College London (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
Judith Sleeman PhD FRSB Lecturer in Developmental Cell Biology BSRC Complex School of Biology University of St Andrews KY16 9ST UK +44 (0)1334 463524 (1)
Mass Spectrometry Facility Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Max-Delbrück Center for Molecular Medicine (MDC) Robert-Rössle-Str. 10, 13125 Berlin, Germany (1)
Nichollas E. Scott, PhD ARC Future Fellow and Group Leader The Department of Microbiology and Immunology Level 6 - Peter Doherty Institute | The University of Melbourne | Vic | 3000 | Australia (1)
Pacific Northwest National Laboratory (1)
Pratik Jagtap, Managing Director, Center for Mass Spectrometry and Proteomics, 43 Gortner Laboratory, 1479 Gortner Avenue, St. Paul, MN 55108 Phone: 612-624-9275 (1)
School of Infection and Immunity ,MVLS, University of Glasgow (1)
School of Medicine, University of St Andrews, St Andrews, Fife, KY16 9TF, Scotland, UK. (1)
School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK (1)
School of Medicine, University of St Andrews, St Andrews, KY16 9TF, United Kingdom. (1)
School of Pharmacy and Bioengineering, Keele University, Staffordshire, UK; and School of Medicine, Keele University, Staffordshire, UK (1)
Sequence database group (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)

Modification

Not available (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (17)
Methylation profiling by high throughput sequencing (10)
Transcription profiling by tiling array (7)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
High-throughput sequencing (2)
ChIP-chip by array (2)
DNA-seq (2)
Methylation profiling by array (2)
Differential (1)
Cell line - High-throughput sequencing (1)
Bisulfite-seq (1)
ScATAC-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (349)
2023 (329)
2021 (321)
2025 (288)
2024 (235)
2020 (227)
2019 (192)
2018 (182)
2015 (146)
2017 (137)
2016 (134)
2014 (116)
2011 (78)
2012 (77)
2013 (69)
2010 (64)
2009 (42)
2026 (30)
2008 (22)
2007 (22)
2006 (17)
2004 (6)
2000 (4)
2005 (3)
2003 (3)
2002 (2)
1998 (1)
1997 (1)

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Allelic dilution series series of C57BL6/J:CAST/EiJ RNA using Smart-seq3

Technical control for allelic detection using Smart-seq3. Liver RNA from pure C57BL6/J and CAST/EiJ strains was combined at varying ratios (0:1, 1:7, 1:3, 3:5, 1:1, 5:3, 3:1, 7:1, 1:0) for a total of 200 pg RNA per sample.

ORGANISM(S): Mus musculus

2022-02-14 | E-MTAB-10709 | biostudies-arrayexpress

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination.

Not available

S-EPMC4914699 | biostudies-literature

Local Chromatin Features Including PU.1 and IKAROS Binding and H3K4 Methylation Shape the Repertoire of Immunoglobulin Kappa Genes Chosen for V(D)J Recombination.

Not available

S-EPMC5698286 | biostudies-literature

ScanFold: an approach for genome-wide discovery of local RNA structural elements-applications to Zika virus and HIV.

Not available

S-EPMC6317755 | biostudies-literature

Computational approaches for the discovery of splicing regulatory RNA structures.

Not available

S-EPMC6819252 | biostudies-literature

RNA-seq of mouse embryonic stem cells with knockout of Nhlrc2 gene or addition of FINCA disease causing NHLRC2 p.Asp148Tyr variant

Fibrosis, neurodegeneration, and cerebral angiomatosis (FINCA) (OMIM 618278) is a rare infantile-onset disease caused by variants in NHL repeat containing 2 (NHLRC2) gene. NHLRC2 is essential for mouse gastrulation (Hiltunen et al., 2022). Here, RNA sequencing was performed on four wild type (WT), f...

ORGANISM(S): Mus musculus

2025-05-22 | E-MTAB-14174 | biostudies-arrayexpress

Topological analysis of DcuA, an anaerobic C4-dicarboxylate transporter of Escherichia coli.

Not available

S-EPMC107505 | biostudies-literature

MorphoCellSorter is an Andrews plot-based sorting approach to rank microglia according to their morphological features.

Not available

S-EPMC12088675 | biostudies-literature

Synthesis, Properties, and Light-Emitting Electrochemical Cell (LEEC) Device Fabrication of Cationic Ir(III) Complexes Bearing Electron-Withdrawing Groups on the Cyclometallating Ligands.

Not available

S-EPMC5080635 | biostudies-literature

Calcium lignosulfonate modulates physiological and biochemical responses to enhance shoot multiplication in Vanilla planifolia Andrews.