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Unknown
(3371)
Transcriptomics
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Proteomics
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Organisms
Homo sapiens
(87)
Mus musculus
(78)
Drosophila melanogaster
(20)
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prokaryotic environmental samples
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Triticum turgidum subsp. durum
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Repository
biostudies-arrayexpress
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pride
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(1)
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(1)
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(1)
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(1)
Wounds and Injuries
(1)
Technology Type
Mass Spectrometry
(61)
Shotgun proteomics
(31)
Bottom-up proteomics
(13)
SWATH MS
(7)
Data-dependent acquisition
(6)
Data-independent acquisition
(6)
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(3)
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(3)
Mass spectrometry
(2)
Illumina HiSeq 2500, ILLUMINA
(1)
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(1)
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(1)
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(1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis
(1)
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(1)
Instrument Platform
Illumina HiSeq 2500
(13)
Illumina NovaSeq 6000
(11)
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(6)
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(6)
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(4)
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(4)
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(2)
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(2)
Eppendorf EpMotion 5073m pipetting robot
(1)
STAR
(1)
Single Cell/Low Input RNA Library Prep Kit for Illumina (#E6420S, New England Biolabs)
(1)
RNA Micro Kit (Qiagen).
(1)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip
(1)
MACS
(1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit
(1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit
(1)
Illumina Genome Analyzer Iix
(1)
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(1)
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(1)
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(1)
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(1)
Illumina NovaSeq X
(1)
Illumina HiSeq X
(1)
DNBSEQ-G400
(1)
Direct infusion MS - negative
(1)
Direct infusion MS - positive
(1)
Publication Date
2022
(22)
2010
(21)
2025
(18)
2015
(16)
2024
(15)
2012
(15)
2011
(14)
2013
(13)
2026
(12)
2020
(12)
2014
(12)
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(11)
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(9)
2019
(9)
2016
(9)
2017
(8)
2009
(8)
2018
(6)
2007
(3)
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(2)
2004
(2)
2005
(1)
2002
(1)
CHEBI ID
CHEBI:15611
(2)
CHEBI:15741
(2)
CHEBI:15891
(2)
CHEBI:16449
(2)
CHEBI:16704
(2)
CHEBI:16811
(2)
CHEBI:17368
(2)
CHEBI:17568
(2)
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(2)
CHEBI:18012
(2)
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(2)
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(2)
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(2)
CHEBI:22660
(2)
CHEBI:24898
(2)
CHEBI:25017
(2)
CHEBI:25094
(2)
CHEBI:26271
(2)
CHEBI:26986
(2)
CHEBI:27266
(2)
CHEBI:27570
(2)
CHEBI:27897
(2)
CHEBI:28044
(2)
CHEBI:28300
(2)
CHEBI:29016
(2)
CHEBI:32816
(2)
CHEBI:6650
(2)
CHEBI:78320
(2)
CHEBI:14314
(1)
CHEBI:15354
(1)
Metabolite Name
3-Hydroxybutyrate
(1)
3-Hydroxyisovalerate
(1)
Acetate
(1)
Acetoin
(1)
Adenine M+0
(1)
Adenine M+1
(1)
Adenine M+2
(1)
Adenine M+3
(1)
Adenine M+4
(1)
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(1)
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(1)
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(1)
Adenosine M+10
(1)
Adenosine M+2
(1)
Adenosine M+3
(1)
Adenosine M+4
(1)
Adenosine M+5
(1)
Adenosine M+6
(1)
Adenosine M+7
(1)
Adenosine M+8
(1)
Adenosine M+9
(1)
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(1)
Arginine
(1)
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(1)
Aspartate
(1)
Betaine
(1)
Butyrate
(1)
Cholate
(1)
Choline
(1)
Creatine
(1)
First Public Date
2019
(4)
2021
(3)
2026
(2)
2024
(2)
2022
(1)
2018
(1)
2017
(1)
2015
(1)
Modelling Approach
Computational model
(2)
Lab affiliation
Cornell University Department of Microbiology
(3)
STORM Therapeutics Limited, Cambridge, United Kingdom
(3)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium
(2)
School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland
(2)
School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK
(2)
Target discovery Institute
(2)
1 Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Spitalgasse 4, A-1090 Vienna, Austria; 2 Department of Neuroscience, Karolinska Institutet, Retzius väg 8, SE-17177 Stockholm, Sweden
(1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium
(1)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China
(1)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (lab head)
(1)
BSRC, University of St Andrews, UK
(1)
Babraham Institute
(1)
Babraham institute
(1)
Biomedical Sciences Research Complex University of St Andrews
(1)
Biomedical Sciences Research Complex, University of St Andrews
(1)
Boston University School of Medicine Center for Biomedical Mass Spectrometry
(1)
College of Veterinary Medicine, The state Key Laboratory of Agricultural Microbiology, Cooperative Innovation Center of Substantial Pig Production, Wuhan, 433070, China
(1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland.
(1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA
(1)
Department of Molecular Neurosciences, Center for Brain 1099 Research, Medical University of Vienna, Vienna, Austria
(1)
Developmental Dynamics Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT
(1)
Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, United Kingdom
(1)
Faculty of Life Sciences, University of Dundee
(1)
Hong Kong Baptist University
(1)
Imperial College London
(1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland
(1)
Institute of Science and Technology in Medicine, Keele Univeristy, Keele, Staffordshire, UK Robert Jones and Agnes Hunt Orthopaedic Hospital, Oswestry, Shropshire, UK
(1)
Lab Head, UQ Diamantina Institute,The University of Queensland
(1)
MRC Laboratory of Molecular Biology
(1)
Mass Spectrometry Facility Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ
(1)
Tags
pathogen:bacterium
(2)
pathogen
(2)
xref:PubMed:35821981
(1)
xref:PubMed:31106359
(1)
xref:PubMed:38918415
(1)
xref:PubMed:26173112
(1)
xref:PubMed:34518534
(1)
xref:PubMed:30739914
(1)
xref:EuropePMC:PMC12913226
(1)
xref:EuropePMC:PMC5780352
(1)
xref:EuropePMC:PMC10416412
(1)
xref:EuropePMC:PMC6221151
(1)
xref:EuropePMC:PMC12167497
(1)
IsPrivate
False
(2)
Submitter Keywords
Ersilia
(2)
Machine Learning Model
(2)
Classification
bacteria
(2)
Modification
Not available
(1)
Study type
RNA-seq of coding RNA
(44)
Transcription profiling by array
(42)
Methylation profiling by high throughput sequencing
(16)
ChIP-chip by array
(11)
ChIP-seq
(10)
Transcription profiling by tiling array
(7)
RNA-seq of total RNA
(6)
Other
(5)
DNA-seq
(4)
Methylation profiling by array
(4)
Genotyping by array
(3)
Bisulfite-seq
(3)
Cell line - High-throughput sequencing
(2)
RNA-seq of coding RNA from single cells
(2)
Unknown experiment type
(1)
Human - High-throughput sequencing
(1)
Plant - High-throughput sequencing
(1)
High-throughput sequencing
(1)
CLIP-seq
(1)
Transcription profiling by RT-PCR
(1)
Comparative genomic hybridization by array
(1)
RIP-seq
(1)
Single nucleus RNA sequencing
(1)
Proteomic profiling by array
(1)
Release Date
2022
(399)
2023
(366)
2024
(324)
2021
(322)
2025
(310)
2020
(255)
2019
(225)
2018
(190)
2015
(170)
2016
(161)
2017
(148)
2014
(137)
2012
(101)
2011
(90)
2013
(80)
2010
(72)
2009
(49)
2026
(43)
2008
(36)
2007
(27)
2004
(9)
2006
(8)
2005
(7)
2002
(5)
2003
(3)
2001
(2)
1998
(2)
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Phosphorus-Sulfur Heterocycles Incorporating an O-P(S)-O or O-P(S)-S-S-P(S)-O Scaffold: One-Pot Synthesis and Crystal Structure Study.
Not available
S-EPMC6151443
|
biostudies-literature
Cite
S-adenosylhomocysteine hydrolase over-expression does not alter S-adenosylmethionine or S-adenosylhomocysteine levels in CBS deficient mice.
Not available
S-EPMC6047060
|
biostudies-literature
Cite
Micro-epidemiology of S. aureus colonisation in atopic eczema disease flares.
Micro-epidemiology of S. aureus colonisation in atopic eczema disease flares.
PRJEB20148
|
ENA
Cite
Not available
PRJEB20251
|
ENA
Cite
Rhodium-catalysed connective synthesis of diverse reactive probes bearing S(VI) electrophilic warheads.
Not available
S-EPMC12456075
|
biostudies-literature
Cite
Non-bonding 1,5-S···O interactions govern chemo- and enantioselectivity in isothiourea-catalyzed annulations of benzazoles.
Not available
S-EPMC5450589
|
biostudies-literature
Cite
Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus.
Not available
S-EPMC3123200
|
biostudies-literature
Cite
The consequences of reconfiguring the ambisense S genome segment of Rift Valley fever virus on viral replication in mammalian and mosquito cells and for genome packaging.
Not available
S-EPMC3923772
|
biostudies-literature
Cite
Biochemical and genetic analysis of Ecm14, a conserved fungal pseudopeptidase.
Not available
S-EPMC7706225
|
biostudies-literature
Cite
Molecular basis of fatty acid selectivity in the zDHHC family of S-acyltransferases revealed by click chemistry.
Not available
S-EPMC5338407
|
biostudies-literature
Cite
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