Antoine G G - OmicsDI

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Unknown (1309)
Transcriptomics (53)
Proteomics (31)
Genomics (17)
Metabolomics (7)
Models (4)

Organisms

Homo sapiens (33)
Andropogon gerardi (26)
Bacteria (26)
Canis lupus familiaris (26)
Cnidaria (26)
Ensifer adhaerens (26)
Eukaryota (26)
Fasciola (26)
Hepatitis B virus (26)
Mus musculus (13)
Arabidopsis (4)
Paxillus involutus (2)
Mycobacterium tuberculosis (2)
Arabidopsis thaliana (2)
Botrytis cinerea (1)
human oral metagenome (1)
Gorilla gorilla gorilla (1)
Rickettsia conorii (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Sinorhizobium medicae (1)
Xenopus tropicalis (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Betula pendula (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Staphylococcus aureus (1)
Oncorhynchus mykiss (1)
Mycobacterium tuberculosis H37Rv (1)
Plasmodium falciparum (1)
Plasmodium falciparum 7G8 (1)

Repository

biostudies-arrayexpress (56)
pride (26)
EGA (14)
MetaboLights (7)
BioModels (4)
MassIVE (4)
jPOST (1)

Tissue

Blood plasma (4)
Colon (4)
Brain (3)
Cell culture (3)
Epithelial cell (3)
Skin (3)
Lung (2)
Peritoneal fluid (2)
Antler (1)
Blood cell (1)
Blood platelet (1)
Eosinophil differentiation (1)
Ileum (1)
Liver (1)
Macrophage (1)
Meniscus (1)
Neutrophil (1)
Primary cell (1)

Disease

GIP-dependent Cushing's syndrome (1)
Acute promyelocytic leukemia (1)
Normal (1)
Colon cancer (1)
Pre-eclampsia (1)
Ulcerative colitis (1)

Technology Type

Mass Spectrometry (26)
Bottom-up proteomics (14)
Shotgun proteomics (10)
Data-dependent acquisition (8)
Mass spectrometry (5)
Data-independent acquisition (5)
Mass spectrometry assay (2)
SWATH MS (2)
Illumina (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Axon GenePix 4000A scanning hardware (2)
Illumina NovaSeq X (2)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Q Exactive (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Chromium Next GEM Chip G (1)
10X v3 (1)
HiSeq 2000 (1)
GenePix 4000B [Axon Instruments] (1)
Curie computer cluster (1)
DNBSEQ-G400 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2026 (12)
2008 (12)
2025 (10)
2010 (7)
2024 (6)
2023 (6)
2014 (5)
2019 (5)
2022 (4)
2016 (4)
2021 (4)
2020 (3)
2015 (3)
2013 (3)
2005 (3)
2011 (2)
2009 (2)
2007 (2)
2017 (2)
2012 (1)
2006 (1)
2004 (1)

UNIPROT ID/AC

P49677 (3)
Q9XFM0 (2)
Q940U6 (2)
Q96247 (2)
Q94JM3 (2)
Q9LPW7 (1)
Q9LW29 (1)
Q9ZR12 (1)
Q570C0 (1)

CHEBI ID

CHEBI:30813 (3)
CHEBI:30805 (3)
CHEBI:15428 (3)
CHEBI:18211 (3)
CHEBI:28837 (3)
CHEBI:33699 (2)
CHEBI:17890 (2)
CHEBI:18240 (2)
CHEBI:62064 (2)
CHEBI:17521 (2)
CHEBI:28822 (2)
CHEBI:17716 (2)
CHEBI:30816 (2)
CHEBI:33508 (2)
CHEBI:29019 (2)
CHEBI:48430 (2)
CHEBI:18101 (2)
CHEBI:59783 (2)
CHEBI:60645 (2)
CHEBI:16997 (2)
CHEBI:15728 (2)
CHEBI:15729 (2)
CHEBI:16977 (2)
CHEBI:30794 (2)
CHEBI:17505 (2)
CHEBI:28875 (2)
CHEBI:28842 (2)
CHEBI:16119 (2)
CHEBI:15741 (2)
CHEBI:17268 (2)

Metabolite Name

Sebacic acid (1)
Pseudo uridine (1)
Phosphate ion (1)
Pentadecanol (1)
N-ethylglycine (1)
Methyl stearate (1)
Methyl linolenate (1)
L-beta-phenyllactic acid (1)
D-lyxosylamine (1)
Dihydrosphingosine (1)
Coprosterol (1)
Capric acid (1)
Alpha-hydroxyisovaleric acid (1)
Acetyl-L-serine (1)
6-deoxyglucose (1)
5-hydroxyvaleric acid (1)
5-hydroxyindole-3-acetic acid (1)
4-hydroxy-3-methoxybenzoic acid (1)
3-(3-hydroxyphenyl)propionic acid (1)
2-hydroxy-3-methyl pentanoic acid (1)
2-hydroxy-4-methyl pentanoic acid (1)
24-ethyl coprostanol (1)
2,3-butanediol (1)
1-O-octadecylglycerol (1)
11-eicosenoic acid (1)
Sophorose (1)
L-(+) lactic acid (1)
Behenic acid (1)
1-hexadecanol (1)
Xanthurenic_acid (1)

IsPrivate

False (4)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (3)
Transcription profiling by tiling array (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
ChIP-chip by array (1)
Other (1)
ChIP-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (180)
2021 (170)
2023 (149)
2025 (138)
2020 (117)
2024 (100)
2017 (82)
2018 (74)
2019 (71)
2016 (57)
2015 (43)
2014 (30)
2026 (23)
2010 (22)
2012 (19)
2013 (18)
2011 (16)
2009 (13)
2008 (13)
2005 (8)
2007 (5)
2006 (5)
2004 (3)
2003 (3)
2002 (3)
2001 (3)

Lab affiliation

Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (8)
Cumming School of Medicine, Department of Physiology and Pharmacology, University of Calgary, Calgary, Alberta, T2N 4N1, Canada. (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Physiology & Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada. McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada. (1)
Department of Physiology & Pharmacology, University of Calgary (1)
Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Alberta T2N 1N4 Canada Snyder Insitute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Alberta T2N 1N4 Canada (1)
Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
Dufour Lab, University of Calgary, department of Physiology and Pharmacology, Biochemistry and Molecular Biology (1)
Hotchkiss Brain Institute and Department of Clinical Neurosciences, University of Calgary, Calgary, Alberta, Canada Departments of Biochemistry and Molecular Biology, and Physiology and Pharmacology, and McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, Canada (1)
McCaig Insitute for Bone and Joint Health, Snyder Insitute for Chronic Diseases, Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Department of Physiology & Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada (1)
McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, AB, Canada. (1)
Physiology & Pharmacology, Cumming School of Medicine, University of calgary, Cagary (1)
Physiology and Pharmacology McCaig Institute Southern Alberta Mass Spectrometry Core facility University of Calgary (1)
Physiology and Pharmacology, University of Calgary (1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France (1)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France ( lab head ) (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UMS 2014 – PLBS, F-59000 Lille, France (1)
Université Paris Cité, CNRS, Epigenetics and Cell Fate, F-75013 Paris, France (1)
lih (1)

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prm-PASEF and g-dia-PASEF analysis of plasma samples from colorectal cancer and control patients

Quantitative analysis of 10 CRC vs 10 control human plasma samples with the prm-PASEF and g-dia-PASEF acquisition methodes

ORGANISM(S): Homo sapiens (Human)

2023-04-11 | PXD036594 | Pride

Pasef prm dia plasma colorectal cancer

Febrile neutropenia prophylaxis, G-CSF physician preferences: discrete-choice experiment.

Not available

S-EPMC11672075 | biostudies-literature

Transcription profiling of human glucose-dependent insulinotropic peptide (GIP)- and adrenocorticotropin-dependent adrenal hyperplasias reveals novel targets for the study of GIP-dependent Cushings syndrome.

The mechanisms responsible for the ectopic adrenal expression of glucose-dependent insulinotropic peptide (GIP) receptor (GIPR) in GIP-dependent Cushing's syndrome (CS) are unknown. Chronic adrenal stimulation by ACTH in Cushing's disease or GIP in GIP-dependent ACTH-independent macronodular adrenal...

ORGANISM(S): Homo sapiens

2007-10-02 | E-GEOD-4060 | biostudies-arrayexpress

Clinical deterioration during neutropenia recovery after G-CSF therapy in patient with COVID-19.

Not available

S-EPMC7515585 | biostudies-literature

Strong effect of Penicillium roqueforti populations on volatile and metabolic compounds responsible for aromas, flavour and texture in blue cheeses

Studies of food microorganism domestication can provide important insight into adaptation mechanisms and lead to commercial applications. Penicillium roqueforti is a fungus with four genetically differentiated populations, two of which were independently domesticated for blue cheese-making, with the...

2021-10-06 | MTBLS1509 | MetaboLights

Holo-APP and G-protein-mediated signaling are required for sAPPα-induced activation of the Akt survival pathway.

Not available

S-EPMC4454324 | biostudies-literature

Segregation of mtDNA throughout human embryofetal development: m.3243A>G as a model system.

Not available

S-EPMC3058134 | biostudies-literature

A single intra-articular injection of 2.0% non-chemically modified sodium hyaluronate vs 0.8% hylan G-F 20 in the treatment of symptomatic knee osteoarthritis: A 6-month, multicenter, randomized, controlled non-inferiority trial.

Not available

S-EPMC6903764 | biostudies-literature

Transcription profiling of mouse small intestine reveals fasting induces a biphasic adaptive metabolic response

Background; The gut is a major energy consumer, but a comprehensive overview of the adaptive response to fasting is lacking. Gene-expression profiling, pathway analysis, and immunohistochemistry were therefore carried out on mouse small intestine after 0, 12, 24, and 72 hours of fasting. Results; In...

ORGANISM(S): Mus musculus

2009-05-13 | E-GEOD-8019 | biostudies-arrayexpress

Transcription profiling of human CAL 27 cells overexpressing Nm23-H1 to identify downstream targets of Nm23-H1

The human nm23-H1 was discovered as a tumor metastasis suppressor based on its reduced expression in melanoma cell lines with low versus high metastatic potential. It encodes for one of two subunits of the nucleoside-diphosphate kinase. Besides its role in the maintenance of the cells NTP pool, nm23...

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-4069 | biostudies-arrayexpress

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