Aquadiva - OmicsDI

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Unknown (6)
Metabolomics (5)
Genomics (5)
Proteomics (2)

Organisms

Aspergillus oryzae (2)
Theileria parva (2)
Aspergillus lentulus (2)
Opisthorchis felineus (2)
Planctomycetales (2)
Aspergillus oerlinghausenensis (2)
Chaetoceros simplex (2)
Aspergillus fischeri (2)
Dendrobium sp. XMW-2002-13 (2)
Pieris rapae rapae (2)
Acipenser baerii x Acipenser schrenckii (2)
Alexandrium pacificum (2)
Polyporus umbellatus GSX09 (2)
Daboia palaestinae (2)
Capsicum annuum (2)
Streptococcus pyogenes NZ131 (2)
Acipenser (2)
Leptospermum scoparium (2)
Daboia russelii (2)
Mycobacterium tuberculosis K (2)
Centella asiatica (2)
Clematis chinensis (2)
Neisseria meningitidis serogroup B (2)
Vibrio ordalii (2)
Rosa x damascena (2)
Bacillus cereus F837/76 (2)
Cytomegalovirus (2)
Magnetospirillum gryphiswaldense (2)
Echis carinatus (2)
NEWT:105487 (2)

Organisms

aquifer metagenome (1)

Repository

MetaboLights (5)
ENA (5)
pride (2)

Technology Type

Mass spectrometry (4)
Mass Spectrometry (2)
Shotgun proteomics (2)
Mass spectrometry assay (1)

Instrument Platform

Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2024 (4)
2022 (2)
2023 (1)

CHEBI ID

CHEBI:182831 (1)
CHEBI:27496 (1)
CHEBI:35033 (1)
CHEBI:7071 (1)

Metabolite Name

PA(18:1(12Z)-O(9S,10R)/14:0) (1)
1,3-Propanediamine (1)
PA(20:4(8Z,11Z,14Z,17Z)/22:6(4Z,7Z,11E,13Z,15E,19Z)-2OH(10S,17)) (1)
PA(TXB2/18:1(11Z)) (1)
2-Isopropoxyethanol (1)
6-Amino-2-methyl-2H-1,3-benzoxazin-4(3H)-one (1)
PS(18:1(9Z)/18:1(12Z)-O(9S,10R)) (1)
Alpha-Fluoromethylhistamine (1)
2-(4-(2-Carboxyethyl)phenethylamino)-5'-N-ethylcarboxamidoadenosine (1)
L-Alaninamide, N-acetyl-L-tyrosyl-L-valyl-N-((1S)-2-carboxy-1-formylethyl)- (1)
3,4-Heptanediol (1)
Martynoside (1)
PE(20:1(11Z)/PGE2) (1)
PGP(20:4(6E,8Z,11Z,13E)-2OH(5S,15S)/a-25:0) (1)
PS(6 keto-PGF1alpha/20:3(8Z,11Z,14Z)) (1)
PS(18:3(6Z,9Z,12Z)/15:0) (1)
PIP(20:5(5Z,8Z,11Z,14Z,16E)-OH(18)/18:0) (1)
(4R,5R)-1-Aminooxy-2,4,5,6-tetrahydroxyhexan-3-one (1)
Trans-2-Hexenedioic acid (1)
N-Methyl-N-2-propynyl-1-indanamine, (S)- (1)
Anordrin (1)
Cis-Linoleic acid (1)
Siphonaxanthin (1)
3-Hydroxybenzo(a)pyrene (1)
Neosalacinol (1)
1-(3,4-Dihydroxyphenyl)-7-(4-hydroxy-3-methoxyphenyl)-1,6-heptadiene-3,5-dione (1)
(2-Mercaptomethyl-3-phenyl-propionyl)-glycine (1)
(5E)-7-[3,5-Dihydroxy-2-(3-hydroxyoctyl)cyclopentyl]hept-5-enoylcarnitine (1)
D-Gluconamide (1)
Blonanserin C (1)

First Public Date

2021 (2)
2026 (1)
2025 (1)
2019 (1)

Release Date

2026 (1)
2021 (1)
2019 (1)
2018 (1)
2017 (1)
2016 (1)

Lab affiliation

Helmholtz Centre for Environmental Research – UFZ GmbH Department of Molecular Systems Biology Permoserstrasse 15 04316 Leipzig, Germany (1)
Helmholtz-Centre for Environmental Research - UFZ GmbH Department of Molecular Systems Biology Permoserstrasse 15 04318 Leipzig, Germany (1)

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AquaDiva: Metagenomics assemblies of 32 groundwater samples

PRJEB36523 | ENA

AquaDiva: Whole-metagenome shotgun sequencing of a groundwater ecosystem of the Hainich Critical Zone Exploratory

PRJEB36505 | ENA

Proteome data on the microbial microbiome of grasshopper feces.

Not available

S-EPMC5153450 | biostudies-literature

Global importance of RNA secondary structures in protein-coding sequences.

Not available

S-EPMC7109657 | biostudies-literature

Quality-filtered sequencing reads of attached communities of carbonate aqufers of Hainich CZE

AquaDiva: Collection of quality-filtered sequencing reads of attached communities from Hainich aquifers

PRJNA1280030 | ENA

Common and phylogenetically widespread coding for peptides by bacterial small RNAs.

Not available

S-EPMC5521070 | biostudies-literature

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).

Not available

S-EPMC7899367 | biostudies-literature

Enrichment of Patescibacteriota from groundwater

Enrichment of a member of Patescibacteriota (class JAEDAM01) from groundwater of a sandstone aquifer

PRJEB123826 | ENA

Fast Screening of Diol Impurities in Methoxy Poly(Ethylene Glycol)s (mPEG)s by Liquid Chromatography on Monolithic Silica Rods.

Not available

S-EPMC6401720 | biostudies-literature

Differential contribution of nitrifying prokaryotes to nitrification in groundwater

The ecophysiology of complete ammonia oxidizing Nitrospira (CMX) and their widespread occurrence in groundwater suggests that CMX bacteria have a competitive advantage over ammonia-oxidizing bacteria (AOB) and archaea (AOA) in these environments. However, the relevance of their activity from the eco...

ORGANISM(S): Escherichia coli

2023-10-24 | PXD039573 | Pride

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18 Results

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