Sort   by:  
 Page size 
TranscriptomicsIdentification of CLF-regulated transcripts using strand-specific RNA-sequencing in Arabidopsis
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we used strand specific RNA-sequencing to profile Arabidopsis transcriptomes obta...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | E-GEOD-61545 | biostudies-arrayexpress
TranscriptomicsArabidopsis: C24 vs rst1
Transcriptional profiling of whole plant comparing C24 vs rst1 mutant Three biological repeat, each sample harvested from 10 4-week old plants, utilizing the Arabidopsis 70-mer oligonucleotide chips (http://ag.arizona.edu/microarray)
ORGANISM(S): Arabidopsis thaliana 
2010-05-16 | E-GEOD-16875 | biostudies-arrayexpress
TranscriptomicsIdentification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Our previous results suggested that CLF may play regulatory roles on seed size and lip...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | E-GEOD-68080 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of siliques at 4 developmental stages in Arabidopsis
To search for the differential expressed genes during post-fertilization and embryonic development in Arabidopsis, We profiled transcriptome of siliques at 4 developmental stages using RNA-seq based on poly(A) selection. Each RNA library yielded 100 million 101-bp paired-end reads.Using Tophat and C...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | E-GEOD-55866 | biostudies-arrayexpress
ProteomicsMulti-Protease Investigation of Arabidopsis Thaliana Cell Culture Mitochondria
The aim of this project is to deeply map the proteome of mitochondria from the model plant Arabidopsis thaliana. For this purpose, mitochondria were isolated from Arabidopsis cell cultures, their proteins extracted and processed using SP3 digestion. To achieve high sequence coverage, the proteins we...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2023-08-02 | MSV000092578 | MassIVE
MetabolomicsFlavonoid pathway intermediates implicate UVR8 in functions beyond canonical UV-B signaling

Plants integrate light signals to regulate development and produce protective compounds such as flavonoids under excessive light stress. While these metabolites protect against light damage, their roles in modulating photoreceptor responses remain unclear. Here we show that naringenin chalcone (N...

2025-07-30 | MTBLS12792 | MetaboLights
TranscriptomicsWRKY33-dependent expression of Arabidopsis genes upon Botrytis cinerea 2100 inoculation
The Arabidopsis thaliana mutant wrky33 is highly susceptible to the necrotrophic fungus Botrytis cinerea. Comparing the expression profiles of B. cinerea-infected wrky33 and WT plants we identified 2765 differentially expressed genes dependent on WRKY33, of which 1675 were up-regulated in the mutant...
ORGANISM(S): Arabidopsis thaliana 
2015-06-15 | E-GEOD-66290 | biostudies-arrayexpress
MetabolomicsMetabolomic Characterization of Knock-Out Mutants in Arabidopsis - Development of a Metabolite Profiling Database for Knock-Out Mutants in Arabidopsis (MeKO)
Despite recent intensive research efforts in functional genomics, the functions of only a limited number of Arabidopsis (Arabidopsis thaliana) genes have been determined experimentally. Thus, improving gene annotation remains a major challenge in plant science. Because metabolite profiling can chara...
2014-03-01 | MTBLS47 | MetaboLights
ProteomicsCharacterization of the cyclic dipeptide cyclo(His-Pro) in Arabidopsis
The iTSA experiment was designed to map putative protein targets of cyclic dipeptides in Arabidopsis.
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2025-04-17 | MSV000097655 | MassIVE
TranscriptomicsExpression profiling during arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid.
Plants have evolved strong innate immunity mechanisms, but successful pathogens evade or suppress plant immunity via effectors delivered into the plant cell. Hyaloperonospora arabidopsidis (Hpa) causes downy mildew on Arabidopsis thaliana, and a genome sequence is available for isolate Emoy2. Here, ...
ORGANISM(S): Arabidopsis thaliana 
2014-11-21 | E-GEOD-53641 | biostudies-arrayexpress
Sort   by:  
 Page size