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Transcriptomicshog1, slt2, rlm1, and msn2/4 mutants exposed to zymolyase
This SuperSeries is composed of the following subset Series: GSE9930: Wild type 3 hour exposure to zymolyase GSE9931: hog1 mutant 3 hour exposure to zymolyase GSE9932: slt2 mutant 3 hour exposure to zymolyase GSE9933: rlm1 mutant 3 hour exposure to zymolyase GSE9934: msn2/4 mutant 3 hour exposure to...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-12684 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of liver endothelial cells in cirrhotic rats
The study was performed in liver-endothelial cells (LECs) isolated from 6 adult male Wistar rats, undergoing a cirrhosis induction protocol as described previously by our group, and LECs isolated from 6 control Wistar rats, according to the criteria of the Investigation and Ethics Committee of the H...
ORGANISM(S): Rattus norvegicus 
2007-09-05 | E-GEOD-1843 | biostudies-arrayexpress
Transcriptomicsrlm1 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of rlm1 deletion, gene involved in cell wall stress response Keywords: cell wall stress response S. cerevisiae (rlm1 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9933 | biostudies-arrayexpress
Transcriptomicsslt2 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of slt2 deletion, gene involved in cell wall stress response Keywords: cell wall stress response S. cerevisiae (slt2 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9932 | biostudies-arrayexpress
Transcriptomicsmsn2/4 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of msn2 msn4 deletion, genes involved in several stress process Keywords: cell wall stress response S. cerevisiae (msn2/4 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600)...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9934 | biostudies-arrayexpress
Transcriptomicshog1 mutant 3 hour exposure to zymolyase
We did transcription profiling on the effect of hog1 deletion, gene involved in cell osmotic stress and cell wall stress response Keywords: cell wall stress response S. cerevisiae (hog1 mutant) was grown on YEPD. For Zymolyase experiments, yeast cells were grown overnight at 24 °C to an optical den...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-19 | E-GEOD-9931 | biostudies-arrayexpress
TranscriptomicsExpression data from yeast (wild type, rlm1 and swi3 mutants) exposed to Congo Red
We did transcription profiling on the effect of rlm1 (MAPK Slt2 transcription factor) deletion and swi3 (component of SWI/SNF complex involved in chromatin remodeling) deletion in genes involved in cell wall stress (Congo Red) response. Three biological samples were analyzed for each condition, and ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-05-24 | E-GEOD-31176 | biostudies-arrayexpress
TranscriptomicsGlobal transcriptional response to transient cell wall damage
Data processing included: 1. Filtering of those bad quality image spots (these includes alterations on the shape or hybridization) 2. Filtering of low intensity which was done flagging with -50 those spots whose feature intensity was lower in any of both channels than the average of the local back...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-09 | E-GEOD-959 | biostudies-arrayexpress
Transcriptomicswhole reference dataset (cell wall chip)
Data processing included: 1. Filtering of those bad quality image spots (these includes alterations on the shape or hybridization) 2. Filtering of low intensity which was done flagging with -50 those spots whose feature intensity was lower in any of both channels than the average of the local back...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-10 | E-GEOD-2105 | biostudies-arrayexpress
UnknownFunctional landscape of ubiquitin linkages connects K29-linked ubiquitylation to epigenome integrity
Not available
S-SCDT-10_1038-S44318-025-00599-7 | biostudies-other
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