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TranscriptomicsGene expression in Aspergillus nidulans at different developmental stages
Microarray analysis was used to compare different developmental stages of the filamentous fungus Aspergillus nidulans. Cells were grown for various times and comparisons made between: 1. Isolated conidia (0 hours) and isotropically expanding cells (3 hours). 2. Isotropically expanding cells (3 hour...
ORGANISM(S): Emericella nidulans 
2008-05-01 | E-GEOD-7698 | biostudies-arrayexpress
TranscriptomicsIdentification of the calcium-responsive genes dependent on CrzA in the filamentous fungus Aspergillus nidulans
Microarray analysis was used to identify the calcium-responsive genes dependent on CrzA in the filamentous fungus Aspergillus nidulans. In order to identify such genes, we conducted the two types of experiment. One was a comparison between wild type with calcium treatment and wild type without cal...
ORGANISM(S): Emericella nidulans 
2008-10-02 | E-GEOD-12953 | biostudies-arrayexpress
TranscriptomicsExpression data from batch cultivations with A. niger, A. oryzae and A. nidulans grown on glucose and glycerol
Conserved transcriptional regulation of glycerol metabolism was investigated in three Aspergillus species, A. nidulans, A. oryzae and A. niger. For this purpose, batch cultivations under well controlled conditions were performed with the three Aspergilli. Samples for RNA extraction were collected an...
ORGANISM(S): Aspergillus oryzae 
2010-06-21 | E-GEOD-15702 | biostudies-arrayexpress
TranscriptomicsAspergillus nidulans strains TNO2a3, M-bM-^HM-^FsnfA and M-bM-^HM-^FschA grown on avicel as sole carbon source
Transcriptome of A. nidulans TNO2a3, M-bM-^HM-^FsnfA and M-bM-^HM-^FschA strains when grown on complete media (CM) and transferred to minimal media plus avicel as a sole carbon source for 8 and 24 hours. Three conditions: complete media (reference) for 24h, and minimal media plus avicel for 8 and 24...
ORGANISM(S): Emericella nidulans 
2013-07-16 | E-GEOD-47810 | biostudies-arrayexpress
TranscriptomicsInducer Free Cellulase Secretion in Neurospora Crassa and comparitive analysis of cellulase induction in Aspergillus nidulans
Purpose: To explore conservation of gene regulation by the transcription factor clr-2/clrB in Neurospora crassa and Aspergillus nidulans Methods: mRNA from wild type and clr-2/clrB mutants were collected after a culture shift from sucrose/glucose to Avicel (crystaline cellulose) or no carbon media R...
ORGANISM(S): Aspergillus nidulans FGSC A4 
2013-09-01 | E-GEOD-44100 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Aspergillus nidulans OE::rsmA
Investigation of whole genome gene expression level changes in Aspergillus nidulans OE::rsmA compared to wild-type RDIT9.32 (veA). A twelve array study using total RNA recovered from six separate cultures of Aspergillus nidulans wild-type RDIT9.32 (veA) and six separate cultures of Aspergillus nidul...
ORGANISM(S): Emericella nidulans 
2012-01-17 | E-GEOD-34220 | biostudies-arrayexpress
TranscriptomicsStudies on the production of fungal polyketides in Aspergillus nidulans using systems biology tools
Using genetic engineering tools available for the model organism Aspergillus nidulans, we constructed two recombinant strains; one expressing the model polyketide Penicillium griseofulvum 6-methylsalicylic acid (6-MSA) polyketide synthase gene, and one expressing the 6-MSA gene and overexpressing th...
ORGANISM(S): Emericella nidulans 
2009-02-27 | E-GEOD-12859 | biostudies-arrayexpress
TranscriptomicsA tri-species Aspergillus array (nidulans arrays)
The full genome sequencing of the ?lamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an A?ymetrix GeneChip developed for tra...
ORGANISM(S): Emericella nidulans 
2008-02-15 | E-GEOD-9275 | biostudies-arrayexpress
GenomicsGenome-wide ChIP seq analysis of Aspergillus nidulans reveals deregulation of fungal nitrogen metabolism triggered by Streptomyces rapamycinicus
Mining of fungal genomes uncovered their great potential for the production of novel secondary metabolites (SMs). However most of them stay silent under standard laboratory cultivation conditions. Co-cultivation of fungi with organism that occur in their natural habitat has shown to be trigger for t...
ORGANISM(S): Aspergillus nidulans 
2018-10-12 | E-MTAB-5819 | biostudies-arrayexpress
TranscriptomicsIdentification of light-regulated genes in Aspergillus nidulans
Light is a major environmental signal regulating many different biological processes. In Aspergillus nidulans light controls asexual and sexual development as well as the production of secondary metabolites. In order to get a global view of genes regulated during asexual development and of genes inv...
ORGANISM(S): Aspergillus nidulans 
2011-06-06 | E-MEXP-3218 | biostudies-arrayexpress
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