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TranscriptomicsNodal Root Bud Development - Transcriptome Analysis
Bioenergy sorghum’s large and deep nodal root system and associated microbiome enables uptake of water and nutrients from and deposition of soil organic carbon into soil profiles, key contributors to the crop’s resilience and sustainability. The goal of this study was to increase our understanding o...
ORGANISM(S): Sorghum bicolor 
2025-05-10 | E-MTAB-15090 | biostudies-arrayexpress
TranscriptomicsGene expression profiling of endocycling cells vs mitotic cells
In this study we used expression microarrays as an entry point to gain further insights into the differences between endocycling cells and mitotic cycling in tissues of the Drosophila larva. Gene expression analyses were performed on tissues hand dissected from yw67c2 early 3rd instar larval tissues...
ORGANISM(S): Drosophila melanogaster 
2010-08-12 | E-GEOD-19029 | biostudies-arrayexpress
ProteomicsAlpine Willows (Salix, Salicaceae)
Contrasting levels of beta-diversity and underlying phylogenetic trends indicate different paths to chemical diversity in highland and lowland willow species Martin Volf*, Jing Vir Leong, Paola de Lima Ferreira, Tereza Volfova, Petr Kozel, Pavel Matos-Maravi, Elvira Horandl, Natascha D. Wagner, Niko...
ORGANISM(S): Salix Elaeagnos (ncbitaxon:386449) Salix Retusa (ncbitaxon:77066) Salix Viminalis (ncbitaxon:40686) Salix Breviserrata (ncbitaxon:1533360) Salix Acutifolia (ncbitaxon:1233969) Salix Fragilis (ncbitaxon:77063) Salix Foetida (ncbitaxon:470271) Salix Helvetica (ncbitaxon:470273) Salix Mielichhoferi Salix Alba (ncbitaxon:75704) Salix Triandra (ncbitaxon:77069) Salix Caprea (ncbitaxon:172267) Salix Lapponum (ncbitaxon:470272) Salix Caesia (ncbitaxon:470572) Salix Daphnoides (ncbitaxon:470274) Salix Waldsteiniana Salix Reticulata (ncbitaxon:75717) Salix Pentandra (ncbitaxon:75715) Salix Hastata (ncbitaxon:75710) Salix Rosmarinifolia (ncbitaxon:717491) Salix Myrtilloides (ncbitaxon:669809) Salix Aurita (ncbitaxon:470270) Salix Herbacea (ncbitaxon:77064) Salix Repens (ncbitaxon:467613) Salix Bicolor (ncbitaxon:1533359) Salix Purpurea (ncbitaxon:77065) Salix Glaucosericea Populus Tremula (ncbitaxon:113636) Salix Serpyllifolia (ncbitaxon:77067) Salix Cinerea (ncbitaxon:470278) 
2023-04-21 | MSV000091773 | MassIVE
TranscriptomicsMolecular profiling of hypothalamic leucine-sensing neurons via PhosphoTRAP
To identify the molecular signature of leucine-activated neurons in the MBH, we adopted the PhosphoTRAP assay following parenchymal injection of leucine into the MBH. Neurons activated following MBH leucine injection (and expressing the neuronal activation marker cFos) co-express Ser240/244-phospho...
ORGANISM(S): Mus musculus 
2026-04-01 | E-MTAB-16665 | biostudies-arrayexpress
TranscriptomicsUncovering the Arabidopsis thaliana nectary transcriptome: nectary and reference tissues
Many flowering plants attract pollinators by offering a reward of floral nectar. Remarkably, the molecular events involved in the development of nectaries, the organs that produce nectar, as well as the synthesis and secretion of nectar itself, are poorly understood. Indeed, to date, no genes have b...
ORGANISM(S): Arabidopsis thaliana 
2009-06-15 | E-GEOD-15617 | biostudies-arrayexpress
TranscriptomicsRegulatory impact of RNA secondary structure across the Arabidopsis thaliana transcriptome
The secondary structure of an RNA molecule plays an integral role in its maturation, regulation, processing, and functionality. However, the global influence of this feature on plant gene expression is still for the most part unclear. Here, we use a high-throughput, sequencing-based, structure-mappi...
ORGANISM(S): Arabidopsis thaliana 
2012-11-15 | E-GEOD-40209 | biostudies-arrayexpress
TranscriptomicsUncovering the Arabidopsis thaliana nectary transcriptome
Many flowering plants attract pollinators by offering a reward of floral nectar. Remarkably, the molecular events involved in the development of nectaries, the organs that produce nectar, as well as the synthesis and secretion of nectar itself, are poorly understood. Indeed, to date, no genes have b...
ORGANISM(S): Arabidopsis thaliana 
2009-06-14 | E-GEOD-15601 | biostudies-arrayexpress
TranscriptomicsmRNA-Seq of head tissue from Doa and fne mutants, Drosophila melanogaster.
Transcriptional profiling of head tissue of Drosophila Darkener of apricot (Doa) and found in neurons (fne) mutants was performed by RNA-SEQ in females and males. The transcriptional and post-transcriptional targets of these genes, which are involved in regulation by several processes including spli...
ORGANISM(S): Drosophila melanogaster 
2014-03-13 | E-GEOD-37811 | biostudies-arrayexpress
TranscriptomicsMolecular characterization of Georgia cohort of primary breast cancer FFPE tissues on custom breast cancer DASL panel
Analysis of 143 formalin-fixed, paraffin-embedded (FFPE) primary breast tumors using a Custom Breast Cancer Panel and Human Cancer Panel for the DASL platform. Molecular markers between the pathology defined subtypes of breast cancer were assessed to hypothesize potential therapeutic targets specifi...
ORGANISM(S): Homo sapiens 
2009-10-23 | E-GEOD-18539 | biostudies-arrayexpress
TranscriptomicsRadical prostatectomy specimens with and without TMPRSS2:ERG fusion from 139 patients with prostate in a Toronto cohort
Prostate tumors with the gene fusion TMPRSS2:ERG have been reported to have a significantly higher risk of recurrence compared with tumors lacking the fusion. Tumors from 139 patients who underwent radical prostatectomy were analyzed for the expression of 502 cancer-related genes to identify genes d...
ORGANISM(S): Homo sapiens 
2009-10-22 | E-GEOD-18655 | biostudies-arrayexpress
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