Autoimmune diseases

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Unknown (14043)
Transcriptomics (1647)
Genomics (1557)
Proteomics (266)
Metabolomics (72)
Other (48)
Genomic (32)
Methylation profiling (24)
Models (15)
Clinical (11)
Multiomics (4)

Organisms

Homo sapiens (1151)
Mus musculus (856)
Rattus norvegicus (38)
Mycobacterium tuberculosis (11)
Campylobacter jejuni (9)
Bos taurus (8)
Streptococcus agalactiae (7)
Staphylococcus aureus (7)
Arabidopsis thaliana (6)
Medicago truncatula (4)
Mycobacterium avium subsp. paratuberculosis (3)
Macaca nemestrina (3)
Neisseria meningitidis (3)
Escherichia coli (3)
Drosophila melanogaster (3)
Oncorhynchus mykiss (3)
Gallus gallus (3)
Metazoa (2)
Acropora palmata (2)
Macaca mulatta (2)
Streptococcus pneumoniae (2)
Clostridioides difficile (1)
Mammalia (1)
Fusarium oxysporum (1)
human gut metagenome (1)
Pinus radiata (1)
Mytilus galloprovincialis (1)
Bacteroides thetaiotaomicron (1)
Chlorocebus aethiops (1)
Burkholderia pseudomallei (1)

Organisms

Mus musculus (500)
Homo sapiens (451)
mouse gut metagenome (8)
Rattus norvegicus (5)
unidentified (4)
Canis lupus familiaris (3)
human gut metagenome (3)
human metagenome (2)
gut metagenome (2)
Trichechus manatus latirostris (1)
Streptomyces tsukubensis (1)
Erysipelotrichaceae bacterium OTU0002 (1)
Canis lupus (1)
Macaca (1)
Callithrix jacchus (1)
Mammalia (1)
Limosilactobacillus reuteri (1)
Oncorhynchus mykiss (1)
Enterococcus gallinarum (1)
Mus (1)
Salmo salar (1)
Felis catus (1)
Homo (1)
mouse metagenome (1)
Bos taurus (1)
Gallus gallus (1)

Repository

ENA (1212)
biostudies-arrayexpress (1026)
geo (861)
EGA (200)
pride (116)
MetaboLights (72)
MassIVE (70)
dbGaP (32)
iProX (32)
BioModels (14)
jPOST (14)
PanoramaPublic (9)
Cell Collective (1)
EVA (1)
GPMDB (1)

Tissue

Cell culture (23)
Blood (13)
T cell (12)
Blood plasma (10)
Blood serum (9)
Primary cell (7)
Spleen (6)
B cell (5)
Blood cell (4)
Feces (4)
Kidney (4)
Lung (4)
Neutrophil (4)
Permanent cell line cell (4)
Leukocyte (3)
Liver (3)
Lymph node (3)
Monocyte (3)
Brain (2)
Cell suspension culture (2)
Epithelial cell (2)
Extracellular exosome (2)
Milk (2)
Pancreas (2)
Peripheral blood mononuclear cell (2)
Retina (2)
Spinal cord (2)
Thymus (2)
Adrenal gland (1)
T-lymphocyte (1)

Disease

Rheumatoid arthritis (6)
Normal (5)
Hypersensitivity reaction type II disease (2)
Inflammatory Bowel Diseases (2)
Tumor bearing (1)
Pulmonary arterial hypertension (1)
Psoriasis vulgaris (1)
Inflammatory bowel disease (1)
Systemic lupus erythematosus (1)
Microscopic Polyangiitis (1)
Rheumatoid Arthritis (1)
EAE-resistant (1)
Myasthenia gravis (seropositive patient with low thymic hyperplasia) (1)
Sjogren's syndrome (1)
Immuno-osseus dysplasiaspondyloenchondrodysplasia (SPENCD) (1)
Primary osteoarthritis (1)
Chronic granulomatous disease (1)
Controled disease patient (1)
Crohn's disease (1)
Type 1 Diabetes Mellitus (1)
IBDV infected (1)
Resistant (1)
Unaffected (1)
Controled disease patient (1)
Reference (1)
Control (1)
Bowel Cancer screening (1)
Endometriosis (1)
Cataract (1)
Communicable Diseases (1)

Technology Type

Mass Spectrometry (116)
Shotgun proteomics (64)
Mass spectrometry (44)
Mass spectrometry assay (20)
Bottom-up proteomics (19)
SWATH MS (14)
Affinity purification coupled with mass spectrometry proteomics (11)
Data-dependent acquisition (11)
Data-independent acquisition (9)
Illumina 15K (8)
Gel-based experiment (8)
Illumina HiSeq 2000 (7)
NMR spectroscopy (7)
Top-down proteomics (7)
Affymetrix 500K, unknown (4)
MSE (3)
Unknown, Affymetrix 500K (2)
All-ion fragmentation (2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
ION_TORRENT, Ion Torrent Proton (1)
Illumina 450K array, ILLUMINA, Illumina HiSeq 2000, NextSeq 500 (1)
ILLUMINA, HiSeq X Ten (1)
Illumina Human Core Exome 12v1-1_a (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, ILLUMINA (1)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (33)
Illumina HiSeq 4000 (28)
NextSeq 500 (22)
Illumina HiSeq 2500 (17)
Illumina HiSeq 2000 (13)
NextSeq 550 (5)
Spectronic Helios Alpha UV-Vis spectrophotometer (4)
Variable Atmosphere Incubator (4)
Illumina NovaSeq X (4)
Illumina HiSeq 1500 (4)
Chemostat (3)
Bioanalyser (3)
10x Genomics Chromium Controller (3)
Illumina MiSeq (3)
Anaerobic workstation with airlock (2)
Affymetrix GeneChip Scanner 3000 7G (2)
Ultracentrifuge (2)
GeneChip Scanner 3000 7G (2)
NanoDrop (2)
N/A (2)
NextSeq 2000 (2)
3’ 10X Genomics Chromium (1)
Lab Bench (1)
Illumina iScan microarray scanner (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
See Description (1)
See Desciption (1)
Manual labeling (1)
Manual extraction (1)
Clinical procedure using endoscopic equimpent (1)

Publication Date

2025 (191)
2026 (172)
2024 (168)
2014 (154)
2023 (142)
2015 (129)
2012 (129)
2013 (124)
2022 (119)
2010 (114)
2020 (108)
2021 (95)
2011 (85)
2016 (82)
2009 (79)
2019 (70)
2008 (64)
2018 (62)
2017 (57)
2007 (27)
2005 (13)
2004 (6)
2006 (4)

UNIPROT ID/AC

P29965 (3)
O15111 (3)
Q01201 (2)
Q13490 (2)
Q13489 (2)
Q9UHD2 (2)
Q6GQQ9 (2)
Q13114 (2)
Q99558 (2)
Q12933 (2)
Q9Y6K9 (2)
O14920 (2)
P25963 (2)
Q9Y4K3 (2)
O43318 (2)
Q04206 (2)
Q00653 (2)
P19838 (2)

ENSEMBL ID

ENSG00000101017 (3)
ENSG00000175104 (1)
ENSG00000102245 (1)

CHEBI ID

CHEBI:15428 (17)
CHEBI:28044 (15)
CHEBI:16737 (12)
CHEBI:27897 (12)
CHEBI:24898 (11)
CHEBI:27266 (11)
CHEBI:16449 (11)
CHEBI:16359 (11)
CHEBI:26271 (10)
CHEBI:18186 (10)
CHEBI:25017 (10)
CHEBI:15741 (10)
CHEBI:28834 (10)
CHEBI:17368 (10)
CHEBI:17822 (9)
CHEBI:18237 (9)
CHEBI:22660 (9)
CHEBI:16811 (9)
CHEBI:28300 (9)
CHEBI:16335 (9)
CHEBI:17750 (9)
CHEBI:15891 (9)
CHEBI:16857 (9)
CHEBI:78320 (9)
CHEBI:16919 (9)
CHEBI:15354 (9)
CHEBI:17895 (9)
CHEBI:30769 (9)
CHEBI:59132 (2)
CHEBI:15422 (1)

Metabolite Name

Adenine (19)
Creatinine (18)
Hypoxanthine (18)
Uracil (17)
Adenosine (17)
Creatine (17)
L-Tyrosine (17)
L-Phenylalanine (17)
Xanthine (16)
Taurine (15)
Cholic acid (15)
Inosine (15)
Betaine (14)
L-Threonine (14)
Deoxycholic acid (14)
Riboflavin (14)
Azelaic acid (14)
Uridine (14)
L-Methionine (14)
Cytosine (13)
Oleic acid (13)
L-Tryptophan (13)
Glycine (12)
Citrulline (12)
L-Proline (12)
Phytosphingosine (12)
Guanine (12)
Linoleic acid (12)
Guanosine (12)
Propionylcarnitine (11)

First Public Date

2025 (174)
2024 (166)
2026 (154)
2023 (133)
2022 (101)
2014 (89)
2020 (84)
2021 (79)
2019 (61)
2018 (52)
2017 (44)
2015 (27)
2016 (24)
2013 (23)
2011 (1)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (4)
Petri net (3)
Delayed differential equation model (1)
Differential equation model (1)

Study status

Recruiting (6)
Suspended (1)
Enrolling by invitation (1)
Terminated (1)
Withdrawn (1)
Not yet recruiting (1)

Lab affiliation

Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Novara, Italy (3)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy (2)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale - UPO (2)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (2)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Marcello Manfredi PhD Biological Mass Spectrometry Lab www.biomass-spec.com Department of Translational Medicine (DiMeT) https://www.agingproject.uniupo.it/ Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy Tel. 3334722270 (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (2)
1 Department of Immunology, Interfaculty Institute for Cell Biology, Tübingen, Germany 2 German Cancer Consortium (DKTK), DKFZ Partner Site Tübingen, Tübingen, Germany (1)
1: Department of Molecular Biology, Division of Chemistry andBioanalytics, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria 2: Christian Doppler Laboratory for Innovative Tools for Biosimilar Characterization, University of Salzburg, Hellbrunner Strasse 34, 5020 Salzburg, Austria (1)
Academy Professor, Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland (1)
Arkana Laboratories, Little Rock, AR (1)
Australian Institute of Tropical Health and Medicine James Cook University (1)
Bio3/Bioinformatics and Molecular Genetics, University of Freiburg, 30Schänzlestrasse 1, D-79104 Freiburg, Germany (1)
Bioanalytical Research Labs, Department of Biosciences & Medical Biology, Universität Salzburg, Austria (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD - University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale, Novara, Italy (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara, Italy (1)
Biological Mass Spectrometry Lab, Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy. (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale Corso Trieste 15/A, 28100, Novara, Italy (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD,University of Piemonte Orientale, Corso Trieste 15/A, 28100, Novara, Italy (1)
Boston College (1)
Chronic Disease Program (UFIEC), Instituto de Salud Carlos III, Majadahonda, Madrid, Spain (1)
Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), Shenzhen, Guangdong;Department of Nephrology, The University of Hong Kong-Shenzhen Hospital, Shenzhen, Guangdong (1)
Clinical and Diagnostic Immunology, Department Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium (1)
Core Unit Proteomics, Berlin Institute of Health (BIH) at Charité and MDC, Berlin, Germany (1)
DZNE Munich / TU Munich (1)
Department Functional Proteomics Medizinisches Proteom-Center Ruhr-University Bochum Building ProDi Gesundheitscampus 4 44780 Bochum Germany (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China (1)
Department of Biochemistry and Molecular Biology, Infection and Immunity theme, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia (1)

Keyword

Remicade (1)
CGD Infection (1)
Chorionic Granulomatous Disease (1)
CGD (1)
Diabete Mellitus (1)
Sickle Cell Disease (1)
Sjogren’s Syndrome (1)
Neglected Diseases (1)
Orphan Diseases (1)
Rare Disease Research (1)
Registries (1)
Batten Disease (1)
Mucolipidosis IV (1)
Undiagnosed (1)
Uncommon Disease (1)
Hypersomnia (1)
Marinesco-Sjogren Syndrome (1)
4p-/Wolf-Hirschhorn Syndrome (1)
Wiedermann-Steiner Syndrome (1)
Hemophagocytic Lymphohistiocytosis (HLH) (1)
Behcet’s Disease (1)
Jansen metaphyseal chondrodysplasia (1)
Chronic recurrent multifocal osteomyelitis (CRMO) (1)
Hereditary Sensory and Autonomic Neuropathy (1)
Nephropathic infantile cystinosis (1)
Ocular cystinosis (1)
Spinal Bulbar Muscular Atrophy (SBMA) (1)
Mucolipidosis (1)
Mitochondrial aminoacyl-tRNA synthetases (Mt-aaRS Disorders) (1)
Shine Syndrome (1)

IsPrivate

False (14)

Model Flag

Non Miriam (1)
Non Kinetic (1)

Submitter Keywords

FROG (4)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (703)
RNA-seq of coding RNA (114)
Methylation profiling by array (27)
RNA-seq of coding RNA from single cells (27)
ChIP-seq (21)
Proteomic profiling by array (18)
Transcription profiling by RT-PCR (16)
Unknown experiment type (14)
Comparative genomic hybridization by array (14)
Other (8)
RNA-seq of non coding RNA (7)
Human - High-throughput sequencing (6)
DNA-seq (6)
RNA-seq of total RNA (4)
Transcription profiling by SAGE (3)
Transcription profiling by tiling array (3)
Methylation profiling by high throughput sequencing (3)
Animal - One-color microarray (2)
Human - Single-cell sequencing (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Genotyping by array (2)
Bisulfite-seq (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
MNase-seq (1)
MeDIP-seq (1)

Release Date

2022 (1725)
2021 (1584)
2023 (1531)
2025 (1372)
2024 (1235)
2020 (1193)
2019 (908)
2018 (823)
2017 (696)
2016 (640)
2015 (606)
2014 (533)
2013 (417)
2012 (384)
2011 (318)
2010 (275)
2026 (213)
2009 (205)
2008 (161)
2007 (79)
2006 (59)
2005 (39)
2004 (22)
2003 (16)
2002 (9)
2000 (8)
2001 (7)
1999 (7)
1997 (2)
1998 (1)

Location

United States (8)
Australia (2)
Taiwan (1)
Colombia (1)
Canada (1)

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Gene Expression Signature Shared in Autoimmune Diseases Not in Unaffected Family Members

Even though autoimmune diseases are heterogeneous, believed to result from the interaction between genetic and environmental components, patients with these disorders exhibit reproducible patterns of gene expression in their peripheral blood mononuclear cells. A portion of this gene expression profi...

ORGANISM(S): Homo sapiens

2010-06-30 | E-GEOD-3447 | biostudies-arrayexpress

Introducing polyautoimmunity: secondary autoimmune diseases no longer exist.

Not available

S-EPMC3290803 | biostudies-literature

Transcriptome profiling of a backcross between experimental autoimmune encephalomyelitis (EAE)-susceptible DA and EAE-resistant PVG rat strains to identify expression quantitative trait loci.

The aim of the experiment is to characterize the genetics and mechanisms of the inflammatory response after induction of experimental autoimmune encephalomyelitis (EAE), a model of multiple sclerosis, by studying the genome wide expression in the spleen in late disease. A backcross was created betwe...

ORGANISM(S): Rattus norvegicus

2013-08-10 | E-MTAB-784 | biostudies-arrayexpress

Salivary Shotgun Metagenome for Autoimmune Diseases

PRJEB9340 | ENA

Peripheral Blood Cells Gene Expression Profiles from Discordant Monozygotic Twins with Systemic Autoimmune disease (SAIDs)

Gene expression profiling in peripheral blood cells from monozygotic twin pairs with various sytemic autoimmune diseases revealed 92 genes that could discriminate between MZ twin pairs and unrelated-matched controls. No genes were found that could discriminate between proband and unaffected twin pai...

ORGANISM(S): Homo sapiens

2010-12-30 | E-GEOD-24060 | biostudies-arrayexpress

Genetically-driven target tissue over-expression of CD40: A novel mechanism in autoimmune disease

The CD40 gene, an important immune regulatory gene, is also expressed and functional on non-myeloid derived cells, many of which are targets for tissue specific autoimmune diseases, including d thyroid follicular cells in Graves’ disease (GD). Whether target tissue CD40 expression plays a role in au...

ORGANISM(S): Mus musculus

2012-10-03 | E-GEOD-39081 | biostudies-arrayexpress

RNA sequencing of monocytes and microglia from mice with experimental autoimmune encephalomyelitis illustrates a changing phenotype with disease course

The role of microglia and infiltrating monocytes in experimental autoimmune encephalomyelitis (EAE) pathogenesis has been controversial. To gain insight into their respective roles, we developed a method for differentiating between microglia and infiltrating monocytes in the CNS using CD44. We used ...

ORGANISM(S): Mus musculus

2014-10-20 | E-GEOD-59725 | biostudies-arrayexpress

Shared HLA Class II in Six Autoimmune Diseases in Latin America: A Meta-Analysis.

Not available

S-EPMC3345213 | biostudies-literature

Bottom-up Proteomics of Saliva in Autoimmune Hepatitis and Primary Biliary Cholangitis

Autoimmune Hepatitis (AIH) and Primary Biliary Cholangitis (PBC) are autoimmune diseases that target the liver in which the immune system produces an inappropriate response to self-antigens resulting in inflammation, damage, and dysfunction of hepatic tissues. Despite progress in the understanding o...

ORGANISM(S): Homo sapiens (Human)

2023-10-24 | PXD039847 | Pride

miRNAs expression in spinal cords of experimental autoimmune encephalomyelitis (EAE) mice

MicroRNAs (miRNAs) have been implicated as fine-tuning regulators controlling diverse biological processes at the level of posttranscriptional repression. Dysregulation of miRNAs has been described in various disease states, including inflammatory autoimmune diseases. By using high-throughput microR...

ORGANISM(S): Mus musculus

2012-12-19 | E-GEOD-37424 | biostudies-arrayexpress

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17715 Results

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