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TranscriptomicsGene expression profile of the SV40-immortalized human corneal epithelial cells
Microarray was used to study global gene expression of a cell culture model based on SV40-immortalized human corneal epithelial (iHCE) cells. The gene expression profile of the cell line was compared to the normal human corneal epithelium. Affymetrix HG-U133A GeneChips® were used for microarray exp...
ORGANISM(S): Homo sapiens 
2010-07-29 | E-GEOD-22539 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Gerbera hybrida flower organs vs a reference pool
Different gerbera hybrida flower organs including pappus bristles, stamen, early and late petal development and flower scape, were compared to a pooled reference sample to determine which genes are abundant for analyzed flower organs. Samples were pooled and included two biological replicants with t...
ORGANISM(S): Gerbera hybrid cultivar 
2004-12-31 | E-MEXP-207 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Gerbera inflorescence sample was compared with a gerbera leaf sample
Gerbera inflorescence sample was compared with a gerbera leaf sample in order to identify flower specific genes. Samples were pooled from different developmental stages and alltogether 8 replicates (including 2 biological replicates with 4 technical replicates each) were independently labelled. Both...
ORGANISM(S): Gerbera hybrid cultivar 
2004-12-31 | E-MEXP-206 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Gerbera hybrida flower organs vs a reference pool
Different gerbera hybrida flower organs including pappus bristles, stamen, early and late petal development and flower scape, were compared to a pooled reference sample to determine which genes are abundant for analyzed flower organs. Samples were pooled and three replicants that were independently ...
ORGANISM(S): Gerbera hybrid cultivar 
2004-12-31 | E-MEXP-134 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Gerbera hybrida flower organs vs leaf
Gerbera inflorescence sample was compared with a gerbera leaf sample in order to identify flower specific genes. Samples were pooled from different developmental stages and 4 replicants were independently labelled. All labellings/hybridizations included two dye swap replicants. Gerbera 9K cDNA micro...
ORGANISM(S): Gerbera hybrid cultivar 
2004-12-31 | E-MEXP-133 | biostudies-arrayexpress
TranscriptomicsMicroRNA sequencing and Novel HPV miRNA discovery in HPV cell lines and human tissue samples
Human papillomaviruses (HPV) preferentially infect keratinocytes of mucous membranes or skin and cause numerous benign and malignant lesions at different anatomical locations. A number of DNA viruses encode their own miRNAs as well. To date, no studies have been able to validate viral miRNAs in papi...
ORGANISM(S): Homo sapiens 
2013-08-18 | E-GEOD-42380 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile in embryonic mesencephalon and neuronal primary cultures
In the mammalian central nervous system (CNS) an important contingent of dopaminergic neurons are localized in the substantia nigra and in the ventral tegmental area of the ventral midbrain. They constitute an anatomically and functionally heterogeneous group of cells involved in a variety of regula...
ORGANISM(S): Rattus norvegicus 
2009-05-10 | E-GEOD-15920 | biostudies-arrayexpress
TranscriptomicsTime course transcriptome of Lactobacillus oligofermentans LMG 22743 during the growth on glucose, ribose and xylose
L. oligofermentans was grown microaerobically on modified (without malic acid, cellulose and bromocresol green) MLD medium (Cavin JF et al., Appl Environ Microbiol 1989), containing either glucose, ribose or xylose as a sole carbon source (50mM) in three replicates. Samples were taken at three time ...
ORGANISM(S): Lactobacillus oligofermentans DSM 15707 = LMG 22743 
2016-08-09 | E-MTAB-4107 | biostudies-arrayexpress
TranscriptomicsHuman Papillomavirus 16 E5 modulates the expression of host microRNAs
The effect of human papillomavirus 16 E5 oncogene on cellular gene expression in human epithelial cells was studied. Alterations in cellular gene expression due to human papillomavirus type 16 E5 oncogene were studied in triplicate microarray screens. Epithelial cells where E5 expression was induced...
ORGANISM(S): Homo sapiens 
2011-08-31 | E-GEOD-24908 | biostudies-arrayexpress
TranscriptomicsExpression profile analysis of Drosophila melanogaster embryonic and larval MANF mutants together with paternal rescue and overexpression conditions
To find out possible pathways and processes influenced by DmMANF we compared the changes in MANF null and overexpressing animals. We used two developmental stages of Drosophila, st 17 embryos and 29-50 hrs after egg laying (AEL) larvae. The timing were decided according to the lethality of MANF mut...
ORGANISM(S): Drosophila melanogaster 
2012-04-19 | E-GEOD-28820 | biostudies-arrayexpress
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