B16 - OmicsDI

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Unknown (1446)
Genomics (670)
Transcriptomics (315)
Proteomics (47)
Other (12)
Models (4)
Metabolomics (4)
Methylation profiling (1)

Organisms

Mus musculus (337)
Allexis (41)
Arabidopsis thaliana (41)
Callinectes sapidus (41)
Ctenopharyngodon idella (41)
Danio rerio (41)
Drosophila (41)
Drosophila melanogaster (41)
Ensifer adhaerens (41)
Entamoeba histolytica (41)
Escherichia coli (41)
Leishmania major strain Friedlin (41)
Listeria monocytogenes (41)
Medicago truncatula (41)
Methylohalobius crimeensis 10Ki (41)
Mus musculus (41)
Mycobacterium tuberculosis (41)
Oryza sativa Indica Group (41)
Physcomitrium patens (41)
Pseudomonas fluorescens WH6 (41)
Pseudomonas putida KT2440 (41)
Rattus norvegicus (41)
Saccharomyces cerevisiae (41)
Schizosaccharomyces pombe (41)
Schizosaccharomyces pombe 972h- (41)
Sinorhizobium meliloti BL225C (41)
Homo sapiens (25)
Chlorocebus aethiops (1)
synthetic construct (1)
Mus (1)

Organisms

Mus musculus (499)
Homo sapiens (17)
groundwater metagenome (6)
tidal flat metagenome (4)
Bacillus nematocida (2)
Klebsiella pneumoniae (2)
Cloacimonetes bacterium SCGC AAA255-B16 (1)
Streptococcus mutans str. B16 P Sm1 (1)
Anaerobacillus alkaliphilus (1)
Phytobacter sp. SCO41 (1)
Chloroflexi bacterium SCGC AB-790-B16 (1)
Phycomyces blakesleeanus B16 (1)
Deferribacteres bacterium SCGC AC-337-B16 (1)
Dickeya fangzhongdai (1)
Mus musculus albula (1)
Bacillus altitudinis (1)
Mus (1)
hot springs metagenome (1)
mouse metagenome (1)
aquatic metagenome (1)
Bacillus velezensis (1)
mouse gut metagenome (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)

Repository

ENA (642)
geo (274)
biostudies-arrayexpress (81)
pride (41)
MetaboLights (4)
BioModels (3)
MassIVE (3)
iProX (2)
ExpressionAtlas (1)
jPOST (1)
PMR (1)

Tissue

Cell culture (13)
Melanocyte (11)
Epithelial cell (5)
Skin (5)
Dendritic cell (4)
Heart (2)
Lung (2)
Myeloid suppressor cell (2)
Spleen (2)
Blood serum (1)
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Brain (1)
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Diploid cell (1)
Early embryonic cell (1)
Endothelial cell of lymphatic vessel (1)
Kidney (1)
Kidney epithelial cell (1)
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Liver (1)
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Macrophage (1)
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Monocyte (1)
Permanent cell line cell (1)
Skeletal muscle (1)
Skeletal muscle fiber (1)
Testis (1)

Disease

Melanoma (11)
Skin melanoma (4)
Cancer (1)
Colon adenocarcinoma (1)
Colorectal adenocarcinoma (1)
Disease free (1)
Disease of metabolism (1)
Melanoma and neural system tumor syndrome (1)
Obesity (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (15)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (6)
Gel-based experiment (5)
Data-dependent acquisition (4)
Mass spectrometry (3)
Top-down proteomics (3)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
SWATH MS (2)
Mass spectrometry assay (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

Illumina HiSeq 2500 (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq X (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - negative - reverse phase (2)
10X (1)
Octo MACS (1)
BD Rhapsody system; Qubit 4.0 Fluorometer (1)
BD Rhapsody system (1)
S1000 Thermal Cycler (BioRad) (1)
SeekOne® Digital Droplet System (Seek Gene) (1)
BD FACSAria III cell sorter (BD Biosciences) (1)
ThermoFisher Clariom S mouse arrays, ThermoFisher Hybridization Oven (1)
ThermoFisher WT Plus kit for cDNA synthesis (1)
Not applicable (1)
BD Influx (1)
RNeasy Mini Kit (1)
Illumina HiSeq X (1)
DNBSEQ-T7 (1)
NextSeq 550 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive Plus (1)

Publication Date

2025 (55)
2022 (45)
2026 (42)
2024 (41)
2023 (30)
2021 (30)
2020 (29)
2019 (21)
2018 (18)
2016 (15)
2008 (15)
2014 (14)
2011 (11)
2013 (10)
2010 (8)
2012 (7)
2017 (6)
2015 (6)
2009 (4)
2007 (1)

UNIPROT ID/AC

C4NUM1 (1)
A2RSY7 (1)
Q9ES17 (1)

CHEBI ID

CHEBI:24835 (1)
CHEBI:48591 (1)
CHEBI:39270 (1)
CHEBI:24059 (1)
CHEBI:50917 (1)
CHEBI:24402 (1)
CHEBI:32955 (1)
CHEBI:36735 (1)
CHEBI:38776 (1)
CHEBI:59659 (1)
CHEBI:38193 (1)
CHEBI:25340 (1)
CHEBI:33833 (1)
CHEBI:48835 (1)
CHEBI:77383 (1)
CHEBI:38670 (1)
CHEBI:37739 (1)
CHEBI:38314 (1)
CHEBI:38093 (1)
CHEBI:24955; CHEBI:52898 (1)
CHEBI:38976; CHEBI:36820 (1)
CHEBI:38669 (1)
CHEBI:48588 (1)
CHEBI:47985 (1)
CHEBI:23245 (1)
CHEBI:39307 (1)
CHEBI:26767 (1)
CHEBI:24436 (1)
CHEBI:22715; CHEBI:35813 (1)
CHEBI:39268 (1)

Metabolite Name

Uracil (2)
Propionylcarnitine (2)
Spermine (2)
L-Threonine (2)
Acetylcarnitine (2)
L-Histidine (2)
Methionine (2)
Guanine (2)
Adenine (2)
Creatine (2)
Inosine (2)
Hypoxanthine (2)
Cycloartanols and derivatives (1)
Miscellaneous mixed metal/non-metals (1)
N-acylpiperidines (1)
Naphthofurans (1)
Fluorenes (1)
Oxasteroids and derivatives (1)
Galanthamine-type amaryllidaceae alkaloids (1)
Glycosphingolipids (1)
Aristolactams (1)
Oxirane carboxylic acids and derivatives (1)
Bilirubins (1)
Imidazoquinolines (1)
Pyrenes (1)
Phenylpyridines (1)
Organic nitro compounds (1)
Methylpyridines (1)
Heteroaromatic compounds (1)
Phenanthrolines (1)

First Public Date

2025 (110)
2024 (90)
2026 (81)
2023 (77)
2022 (67)
2020 (46)
2021 (44)
2019 (39)
2014 (31)
2018 (28)
2017 (15)
2016 (5)
2013 (5)
2015 (4)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Fudan University Cancer Hospital, China (2)
1.CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi, 110025, India 2. Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh 201002, India (1)
CRUK Scotland Institute, Garscube Estate, Switchback Road, Glasgow, G61 1BD Department of Biochemistry, University of Cambridge, Cambridge, CB2 1GA, UK (1)
CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110025, India Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh 201002, India (1)
Central Institute for Translational Cancer Research (TranslaTUM) Radiation Immuno-Oncology Group, Klinikum rechts der Isar (1)
Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Australia (1)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm 17177, Sweden. Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow 119146, Russia. (1)
Department of Biochemistry and Molecular Biology - Postgraduate Program in Sciences (Biochemistry) - UFPR (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, BW, Germany (1)
Department of Pharmacology, School of Basic Medical Sciences, Health Science Center, Peking University and Beijing Key Laboratory of Tumor Systems Biology, Peking University, Beijing 100191, China (1)
Department of Proteomics, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, USA; Department of Pathology, University of Massachusetts Medical School, Worcester, MA, USA. (1)
Department: Radiation Oncology; Weill Cornell Medicine: Englander Institute of Precision Medicine; USA. (1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
Functional Proteomics, ICR (1)
General Manager of PROMEC, NTNU, Norway (1)
Lab head, WEHI, Melbourne, Australia (1)
Laboratory of Cancer Signaling, University of Liège, C.H.U. Sart Tilman, Liège 4000, Belgium (1)
Laura Santambrogio Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
Ludwig Institute for Cancer Research Department of Oncology, University hospital of Lausanne, Switzerland (1)
MSD Singapore (1)
Monash University (1)
Nottingham Trent University (1)
Primary Investigator Biology Dept, The City College of NY City University of NY (1)
Professor of Molecular Immunology, Wellcome Trust Senior Research Fellow Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge UK, CB2 1QP (1)
Proteomics Unit Spanish National Cancer Research Centre (CNIO) (1)
Proteomics Unit. Navarrabiomed-Miguel Servet Foundation (1)
Proteomics Unit. navarrabiomed-miguel Servet Foundation (Pamplona-Spain) (1)
Radiation Oncology Department; Weill Cornell Medicine, NY, 10065 (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (3)

Classification

bacteria (5)
fungi (1)

Modification

Not available (1)

Study type

Transcription profiling by array (56)
RNA-seq of coding RNA (12)
RNA-seq of coding RNA from single cells (6)
Cell line - High-throughput sequencing (2)
DNA-seq (2)
Genotyping by array (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2021 (155)
2023 (150)
2022 (150)
2025 (142)
2020 (124)
2024 (112)
2019 (111)
2018 (95)
2017 (86)
2016 (82)
2014 (57)
2015 (55)
2013 (41)
2012 (39)
2011 (32)
2010 (26)
2009 (20)
2008 (19)
2026 (10)
2006 (5)
2000 (4)
2007 (3)
2005 (3)
2003 (3)
2001 (2)
1999 (1)

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B16 versus B16B1

Analysis of gene expression patterns in cancer improved the understanding the mechanisms underlying the process of metastatic progression. Recent studies have attributed an important role to B-1 cells, a subset of B lymphocytes, in melanoma progression. It was already demonstrated that in vitro inte...

ORGANISM(S): Mus musculus

2013-06-05 | E-MEXP-3599 | biostudies-arrayexpress

Melan-a melanocytes and B16 melanoma cells

This SuperSeries is composed of the following subset Series: GSE11580: Time course RA-treatment of B16 mouse melanoma cells GSE11584: Melan-a mouse melanocytes vs. B16 mouse melanoma cells Keywords: SuperSeries Refer to individual Series

ORGANISM(S): Mus musculus

2008-07-31 | E-GEOD-11588 | biostudies-arrayexpress

MichaelPanCardiacAPModel

Michael Pan's own bond graph implementation of the cardiac AP model (based on the Luo-Rudy model) as shown in page 71 of his thesis.

b16 | Physiome Model Repository

Phycomyces blakesleeanus B16

Phycomyces blakesleeanus B16 genome sequencing

PRJNA337309 | ENA

Activation of Wnt signaling pathways in murine B16-F1 melanoma cells

Genome-wide transcriptional profiling using microarrays was used to compare gene regulation in B16 murine melanoma cells that were: 1) stably transduced with Wnt1-iresGFP; 2) stably transduced with Wnt3A-iresGFP; 3) stably transduced with Wnt5A-iresGFP; and 4) stably transduced with GFP and treated ...

ORGANISM(S): Mus musculus

2014-10-11 | E-MTAB-3012 | biostudies-arrayexpress

Mouse melanoma cell line B16-F10 treated with G007-LK

The mouse melanoma cell line B16-F10 provided by American Type Culture Collection (ATCC® CRL-6475™) were treated with DMSO, G007-LK, WNT or G007-LK+WNT, done in triplicates for a total of 12 samples.

ORGANISM(S): Mus musculus

2021-07-01 | E-MTAB-8101 | biostudies-arrayexpress

Bacillus nematocida strain:B16

Bacillus nematocida strain:B16 Genome sequencing

PRJNA624008 | ENA

Bacillus velezensis strain:B16

Bacillus velezensis strain:B16 Genome sequencing

PRJNA1332910 | ENA

Klebsiella pneumoniae strain:B16

Klebsiella pneumoniae B16 Genome sequencing and assembly

PRJNA401423 | ENA

RNA sequencing analysis of B16-F1, B16-F1R2 and B16-F1R2L