Bacilli - OmicsDI

Show results for

Unknown (2007)
Genomics (327)
Transcriptomics (158)
Proteomics (24)
Metabolomics (16)
Models (5)
Other (2)
Clinical (1)

Organisms

Mycobacterium tuberculosis (59)
Homo sapiens (34)
Mycobacterium tuberculosis H37Rv (15)
Mus musculus (14)
Oryctolagus cuniculus (6)
Bos taurus (5)
Mycobacterium avium subsp. paratuberculosis K-10 (4)
Escherichia coli (3)
Aspergillus niger (3)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (3)
Salmonella enterica (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Shigella sonnei (2)
Bacillus cereus ATCC 14579 (2)
Bacillus methanolicus (1)
Neisseria gonorrhoeae F62 (1)
Bacteria (1)
Escherichia coli CFT073 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Dickeya dadantii 3937 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu (1)
Bacillus subtilis subsp. subtilis (1)
Yersinia pseudotuberculosis (1)
Actinobacillus pleuropneumoniae (1)
Bacillus anthracis (1)
Anopheles gambiae (1)
mixed sample (1)
Streptococcus pneumoniae (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Escherichia coli K-12 (1)

Organisms

Mycobacterium tuberculosis (33)
Homo sapiens (17)
Mus musculus (13)
Mycobacterium tuberculosis H37Rv (8)
Bacilli bacterium (8)
Lysinibacillus irui (5)
Bacillus subtilis (4)
Limosilactobacillus fermentum (4)
Bacilli (3)
Mycobacterium canetti (3)
Oryctolagus cuniculus (3)
Bacillus thuringiensis (3)
Acinetobacter baumannii (3)
Bacillus (3)
Bacillus velezensis (3)
Bos taurus (3)
Anoxybacillus flavithermus (2)
Mycobacterium avium subsp. paratuberculosis K-10 (2)
mouse gut metagenome (2)
Bacillus pumilus (2)
Caldalkalibacillus thermarum TA2.A1 (1)
[Bacillus thuringiensis] serovar konkukian str. 97-27 (1)
Mycobacterium canetti CIPT 140070002 (1)
Mycobacterium canetti CIPT 140070013 (1)
Mycobacterium canetti CIPT 140070005 (1)
Bacilli bacterium PM5-9 (1)
Bacilli bacterium PM5-3 (1)
Mycobacterium canetti CIPT 140070007 (1)
Bacillus sp. TA1 (1)
Bacillus sp. MSP13 (1)

Repository

ENA (321)
biostudies-arrayexpress (84)
geo (80)
MetaboLights (13)
pride (12)
MassIVE (6)
BioModels (5)
EGA (3)
GNPS (3)
iProX (2)
jPOST (2)
PanoramaPublic (1)

Tissue

Cell culture (1)
Cell suspension culture (1)
Macrophage (1)
Sac (1)
Venom sac (1)

Disease

Colorectal cancer (1)
Anthrax disease (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (12)
Mass spectrometry (7)
Shotgun proteomics (7)
Mass spectrometry assay (5)
Top-down proteomics (2)
NMR spectroscopy (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
MSE (1)
SWATH MS (1)

Instrument Platform

NextSeq 500 (4)
Liquid Chromatography MS - positive - reverse-phase (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Nanodrop N1000 spectrophotometer (2)
Illumina HiSeq 2000 (2)
LTQ FT (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Affymetrix 428 (1)
Chemostat (1)
Variable Atmosphere Incubator (1)
NA (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
MaXis (1)
Agilent 6530 Accurate-Mass (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
RP-HPLC-ESI-qQ-ToF (1)
TimsTOF HT (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Q Exactive (1)

Publication Date

2010 (26)
2018 (17)
2021 (15)
2012 (14)
2024 (12)
2022 (12)
2011 (12)
2015 (11)
2007 (11)
2014 (10)
2026 (10)
2019 (9)
2013 (9)
2017 (7)
2016 (7)
2025 (7)
2023 (6)
2020 (4)
2009 (4)
2008 (4)

CHEBI ID

CHEBI:6650 (6)
CHEBI:16891 (4)
CHEBI:30915 (4)
CHEBI:15741 (4)
CHEBI:30887 (4)
CHEBI:18012 (4)
CHEBI:30744 (4)
CHEBI:30769 (4)
CHEBI:15380 (4)
CHEBI:15351 (4)
CHEBI:15346 (4)
CHEBI:17568 (3)
CHEBI:28834 (3)
CHEBI:16359 (3)
CHEBI:32816 (3)
CHEBI:9410 (3)
CHEBI:17368 (3)
CHEBI:16265 (2)
CHEBI:16521 (2)
CHEBI:81240 (2)
CHEBI:9347 (2)
CHEBI:133176 (2)
CHEBI:30817 (2)
CHEBI:133057 (2)
CHEBI:17768 (2)
CHEBI:16765 (2)
CHEBI:59783 (2)
CHEBI:52022 (2)
CHEBI:16755 (2)
CHEBI:33231 (1)

Metabolite Name

Guanosine (3)
Palmitoleic acid (3)
L-Glutamine (3)
Sucrose (3)
Linoleyl-carnitine (2)
Deoxycholic acid (2)
Fructosyl-lysine (2)
Myristoyl Ethanolamide (2)
4-Tiglylcarnitine (2)
Agmatine (2)
Triethyl phosphate (2)
Harmalol (2)
QH(2) (2)
Dumetorine (2)
PE(20:4/0:0) (2)
PE(18:2/0:0) (2)
PE(22:6/0:0) (2)
C75 (2)
Taurohyocholic acid (2)
1-Palmitoyl-sn-glycero-3-phosphocholine (2)
L-Methionine sulfoxide (2)
LysoPE(16:0/0:0) (2)
2-Phenylethyl acetate (2)
Tropic acid (2)
Benzophenone (2)
LysoPC(15:0/0:0) (2)
Uridine (2)
Taurine (2)
Serine (2)
Proline (2)

First Public Date

2025 (37)
2018 (35)
2021 (29)
2014 (29)
2024 (28)
2023 (26)
2022 (21)
2013 (19)
2017 (18)
2020 (17)
2015 (15)
2019 (14)
2026 (12)
2016 (11)
2012 (9)
2011 (1)

Modelling Approach

Ordinary differential equation model (4)
Computational model (1)

Study status

Recruiting (1)

Lab affiliation

Agroscope Institute for Food Sciences Schloss 1 8820 Waedenswil Switzerland (1)
CSIR-Institute of Genomics and Integrative Biology (1)
Department of Animal and Aquaculture Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Aas, Norway (1)
Department of Chemistry, Johns Hopkins University (1)
Department of Mass Spectrometry of Bio-Macromolecules, Swammerdam Institue for Life Sciences, University of Amsterdam, The Netherlands. (1)
Fundacion Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Head of Mass Spectrometry Facility Max Planck Institute for Molecular Genetics Ihnestrasse 63-73 14195 Berlin, GERMANY (1)
ISAS Bunsen-Kirchhoff-Str. 11 44139 Dortmund Germany (1)
Laboratory of Genetics and Physiology of Mycobacterium, Institute of Medical Biology of the Polish Academy of Sciences, Lodz, Poland (1)
Prof. Dr. Martin von Bergen Head of Department of Molecular Systems Biology Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 1211 Martin.vonbergen@ufz.de, http://www.ufz.de/index.php?de=40881 (1)
UMR5089 CNRS Universite de Toulouse IPBS France (1)
University Medicine Grefifswald, Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

bacteria (71)
fungi (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (7)
ChIP-chip by tiling array (2)
One-color microarray (2)
High-throughput sequencing (2)
Other (2)
Human - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
Other (1)

Release Date

2022 (214)
2021 (203)
2025 (175)
2023 (173)
2020 (160)
2024 (131)
2019 (122)
2018 (115)
2016 (112)
2017 (101)
2015 (93)
2014 (91)
2012 (63)
2010 (60)
2013 (58)
2011 (58)
2008 (25)
2009 (23)
2007 (21)
2006 (19)
2026 (18)
2005 (12)
2002 (10)
2004 (9)
2003 (8)
1999 (6)
2001 (5)
2000 (3)
1998 (3)

Location

China (1)

Previous page
1 / 254
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 254
Next page

Sort by:

Relevance

Page size

Bacilli

Bacilli Genome sequencing and assembly

PRJNA768416 | ENA

Bacilli

Bacilli Raw sequence reads

PRJNA1364733 | ENA

Bacilli bacterium strain:VT-842

Bacilli bacterium strain:VT-842 Genome sequencing and assembly

PRJNA454687 | ENA

Bacilli bacterium strain:VT-88

Bacilli bacterium strain:VT-88 Genome sequencing and assembly

PRJNA480634 | ENA

Bacilli bacterium strain:VT-124

Bacilli bacterium strain:VT-124 Genome sequencing and assembly

PRJNA480635 | ENA

Bacilli bacterium strain:VT-841

Bacilli bacterium strain:VT-841 Genome sequencing and assembly

PRJNA454682 | ENA

Bacilli bacterium

Bacilli bacterium overview

PRJNA492695 | ENA

Bacilli bacterium strain:VT-441

Bacilli bacterium VT-441 Isolated from the Intestine of a Patient with Duodenal Cancer

PRJNA454688 | ENA

Bacilli bacterium strain:VT-005

Bacilli bacterium VT-005 Isolated from the Intestine of a Patient with Duodenal Cancer

PRJNA454689 | ENA

Fat, lazy and indifferent - profiling persistent drug-tolerant tubercule bacilli from patient sputa during treatment predicts drug efficacy

Amplified M.tb RNA derived from 15 subjects at multiple time intervals before and during chemotherapy (totalling 52 samples) was profiled alongside M.tb H37Rv RNA extracted from in vitro log phase bacilli (2 biological replicates hybridised in duplicate) as a standardised comparator. Amplified mycob...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2016-04-12 | E-MTAB-3872 | biostudies-arrayexpress

Previous page
1 / 254
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 254
Next page

Sort by:

Relevance

Page size

2540 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

IsPrivate

Submitter Keywords

Classification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets