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MetabolomicsBacterial extracellular vesicles as recyclable nutrient reservoirs

Bacterial extracellular vesicles (EVs) are known to mediate intercellular communication, virulence, and immune modulation. Here we show that bacteria can utilise EVs also as recyclable nutrient reservoirs. Using Bacillus cereus as a model organism, we demonstrate that EVs exhibit distin...

2026-02-18 | MTBLS13260 | MetaboLights
TranscriptomicsReciprocal communication between endometrial stromal cells and macrophages
Endometriosis is an inflammatory disease and bone marrow-derived cells are abundant in endometriotic lesions and in the peritoneal fluid of women with the disease. This study tested the hypothesis that reciprocal communication occurs between macrophages and cultured human endometrial stromal cells ...
ORGANISM(S): Homo sapiens 
2010-07-21 | E-GEOD-19834 | biostudies-arrayexpress
TranscriptomicsTranscriptional analysis for cell-cell communication during graft union development in Arabidopsis
Grafting is an ancient cloning method that has been used widely for thousands of years in agricultural practices. However, the molecular mechanisms for graft union development are still largely unknown. The developmental stage of graft union was characterized based on micrografting method. Microarra...
ORGANISM(S): Arabidopsis thaliana 
2012-05-02 | E-GEOD-36447 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of rat kidney tubules infected with uropathogenic E. coli to study early local bacterial inflammation
The transcriptome of early local kidney inflammation was profiled. Rat kidney tubules were injected with uropathogenic E. coli or PBS control. After incubation time, kidney samples were processed and transcription was assayed. Three rats were used per condition.
ORGANISM(S): Rattus norvegicus 
2010-04-14 | E-MEXP-2136 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human innate immune responses (host response) to bacteria
The innate immune response is crucial for defense against microbial pathogens. To investigate the molecular choreography of this response, we carried out a systematic examination of the gene expression program in human peripheral blood mononuclear cells responding to bacteria and bacterial products....
ORGANISM(S): Homo sapiens 
2005-09-21 | E-SMDB-573 | biostudies-arrayexpress
TranscriptomicsStereotyped and specific gene expression programs in human innate immune responses to bacteria.
The innate immune response is crucial for defense against microbial pathogens. To investigate the molecular choreography of this response, we carried out a systematic examination of the gene expression program in human peripheral blood mononuclear cells responding to bacteria and bacterial products....
ORGANISM(S): Homo sapiens 
2005-11-15 | E-GEOD-3611 | biostudies-arrayexpress
GenomicsBacterial RNA promotes proteostasis through inter-tissue communication in C. elegans
Bacterial RNA promotes proteostasis through inter-tissue communication in C. elegans
PRJNA1085675 | ENA
TranscriptomicsGenome Wide Association identifies Novel Loci Involved Fungal Communication
Understanding how genomes encode complex cellular and organismal behaviors is an outstanding challenge of modern genetics. Unlike classical screening methods, analysis of the genetic variation that occurs naturally in wild populations can enable rapid, genome-scale trait mapping with a medium-throu...
ORGANISM(S): Neurospora crassa 
2013-03-28 | E-GEOD-45406 | biostudies-arrayexpress
TranscriptomicsTranscriptional landscape of transkingdom communication between Candida albicans and Streptococcus gordonii
Recent studies have shown that the transcriptional landscape of the pleiomorphic fungus Candida albicans is highly dependent upon growth conditions. Here using a dual RNA-seq approach we identified 299 C. albicans and 72 Streptococcus gordonii genes that were either up- or down-regulated specificall...
ORGANISM(S): Candida albicans 
2015-06-22 | E-GEOD-68477 | biostudies-arrayexpress
TranscriptomicsBacterial RNA promotes proteostasis through inter-tissue communication in C. elegans
Life expectancy has been increasing over the last decades, which is not matched by an increase in healthspan. Besides genetic composition, environmental and nutritional factors influence both health- and lifespan. Diet is thought to be a major factor for healthy ageing. Here, we show that dietary RN...
ORGANISM(S): Caenorhabditis elegans 
2025-11-18 | GSE261167 | GEO
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