Bacterial proteins/genetics

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Unknown (149)
Transcriptomics (74)
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Organisms

Yersinia pestis (1)
Porphyromonas gingivalis (1)
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Synechocystis sp. PCC 6803 (1)
Homo sapiens (1)

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biostudies-arrayexpress (81)
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Tissue

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Disease

Osteomyelitis (1)

Technology Type

Mass Spectrometry (9)
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Instrument Platform

NextSeq 550 (3)
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Publication Date

2011 (12)
2012 (11)
2010 (11)
2008 (10)
2013 (9)
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2014 (6)
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2006 (4)
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2015 (3)
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2020 (2)
2016 (2)
2007 (2)
2019 (2)
2023 (1)
2009 (1)
2005 (1)
2024 (1)

CHEBI ID

CHEBI:35780 (1)
CHEBI:143581 (1)
CHEBI:144053 (1)
CHEBI:144052 (1)
CHEBI:144049 (1)
CHEBI:144039 (1)
CHEBI:131187 (1)
CHEBI:144042 (1)
CHEBI:746917 (1)
CHEBI:144050 (1)
CHEBI:89058 (1)
CHEBI:75568 (1)
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CHEBI:16830 (1)
CHEBI:68428 (1)
CHEBI:18139 (1)
CHEBI:60647 (1)
CHEBI:28824 (1)
CHEBI:28866 (1)
CHEBI:75456 (1)
CHEBI:28941 (1)
CHEBI:28054 (1)
CHEBI:16016 (1)
CHEBI:18185 (1)
CHEBI:39246 (1)
CHEBI:28623 (1)
CHEBI:133637 (1)
CHEBI:75455 (1)
CHEBI:76341 (1)
CHEBI:18394 (1)

Metabolite Name

FFA(22:5) (2)
FFA(18:2) (2)
FFA(18:1) (2)
FFA(14:0) (2)
FFA(10:0) (2)
LPE(20:4/0:0) (2)
LPE(0:0/18:2) (2)
LPE(18:0/0:0) (2)
FFA(16:1) (2)
FFA(16:0) (2)
FFA(19:1) (2)
LPE(18:1/0:0) (2)
LPC(14:0/0:0) (2)
TG(O-16:0_16:0_20:4) (1)
TG(9:0_18:1_18:2) (1)
TG(9:0_16:0_18:2) (1)
TG(8:0_16:0_18:3) (1)
TG(8:0_16:0_18:1) (1)
TG(8:0_16:0_16:0) (1)
TG(8:0_14:0_18:2) (1)
TG(8:0_14:0_18:1) (1)
TG(8:0_14:0_18:0) (1)
TG(8:0_14:0_16:0) (1)
TG(24:0_18:1_20:1) (1)
TG(20:1_22:1_18:4) (1)
TG(20:0_18:1_22:5) (1)
TG(18:2_20:3_22:5) (1)
TG(18:2_20:2_22:6) (1)
TG(18:2_18:3_18:4) (1)
TG(18:1_21:1_18:2) (1)

First Public Date

2014 (4)
2025 (3)
2026 (2)
2022 (2)
2024 (1)
2021 (1)
2017 (1)

Classification

bacteria (3)

Study type

Transcription profiling by array (48)
ChIP-seq (9)
RNA-seq of coding RNA (9)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Other (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
CUT&RUN (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2013 (18)
2025 (17)
2021 (16)
2020 (16)
2010 (16)
2012 (15)
2022 (14)
2023 (13)
2016 (12)
2011 (12)
2015 (11)
2014 (11)
2008 (11)
2024 (8)
2018 (7)
2006 (6)
2019 (6)
2009 (4)
2017 (4)
2026 (3)
2005 (3)
2007 (2)
2001 (2)
1998 (2)
2002 (1)

Lab affiliation

Novartis Institute of Biomedical Research, Cambridge, MA (2)
Children's Hospital of Philadelphia (1)
Max Planck Institute for terrestrial Microbiology Kar-von-Frisch Str. 10 35091 Marburg Germany (1)
Novartis Institute for Biomedical Research, Cambridge MA (1)
Novartis Institute for Biomedical Research, Cambridge, MA (1)
Novartis Institute of Biomedical Research, Cambridge MA (1)
Section for Evolutionary Genomics, The Globe Institute, University of Copenhagen, Denmark (1)
University of Washington, Department of Genome Sciences (1)

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Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803

The unicellular cyanobacterium Synechocystis sp. PCC 6803 is a model system for studying biochemistry, genetics and molecular biology of photobiological processes. Despite its importance in basic and applied research, the genome-wide picture of transcriptional regulation in this bacterium is limited...

ORGANISM(S): Synechocystis sp. PCC 6803

2008-07-24 | E-GEOD-11970 | biostudies-arrayexpress

Multilocus analysis of extracellular putative virulence proteins made by group A Streptococcus: population genetics, human serologic response, and gene transcription.

Not available

S-EPMC34706 | biostudies-literature

Characterization of the GbdR regulon in Pseudomonas aeruginosa

Pseudomonas aeruginosa displays tremendous metabolic diversity, controlled in part by the abundance of transcription regulators in the genome. We have been investigating P. aeruginosaM-bM-^@M-^Ys response to the host, particularly changes regulated by the host-derived quaternary amines choline and g...

ORGANISM(S): Pseudomonas aeruginosa

2013-10-23 | E-GEOD-49759 | biostudies-arrayexpress

Bacterial secretins: Mechanisms of assembly and membrane targeting.

Not available

S-EPMC7096711 | biostudies-literature

Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...

ORGANISM(S): Yersinia pestis

2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress

Generation of Recombinant SARS-CoV-2 Using a Bacterial Artificial Chromosome.

Not available

S-EPMC7646048 | biostudies-literature

Bacterial protein meta-interactomes predict cross-species interactions and protein function.

Not available

S-EPMC5353844 | biostudies-literature

Identification of Genetic Variants via Bacterial Respiration Gas Analysis.

Not available

S-EPMC7701088 | biostudies-literature

A new family of bacterial ribosome hibernation factors.