Bacteriophages - OmicsDI

Show results for

Unknown (3843)
Genomics (1434)
Transcriptomics (84)
Proteomics (39)
Other (13)
Metabolomics (13)
Models (1)
Clinical (1)

Organisms

Homo sapiens (14)
Escherichia coli (13)
Pseudomonas aeruginosa (10)
Mus musculus (6)
Vibrio cholerae (6)
Staphylococcus aureus (5)
Thermus thermophilus HB8 (4)
Campylobacter jejuni (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Caulobacter vibrioides (3)
Escherichia coli CFT073 (2)
Acinetobacter baumannii AB5075 (2)
Listeria monocytogenes EGD-e (2)
Listeria monocytogenes (2)
Pseudomonas aeruginosa PAO1 (2)
Pacifastacus leniusculus (1)
Bacteroides phage p00 (1)
Geobacillus sp. E263 (1)
Mycobacterium phage Giles (1)
Shewanella piezotolerans WP3 (1)
Lactococcus lactis (1)
Bacteroides thetaiotaomicron (1)
Clostridium botulinum (1)
Bartonella grahamii (1)
Synechococcus phage S-PM2 (1)
Treponema denticola (1)
Neisseria meningitidis (1)
Porphyromonas gingivalis (1)
Streptococcus dysgalactiae subsp. dysgalactiae (1)
Lactobacillus delbrueckii subsp. bulgaricus (1)

Organisms

Vibrio anguillarum (26)
Bacteriophage sp. (21)
Escherichia coli (19)
Klebsiella pneumoniae (10)
Escherichia phage (9)
unclassified bacterial viruses (7)
Caudoviricetes (7)
Viruses (6)
Vibrio cholerae (6)
Pseudomonas aeruginosa (6)
Mus musculus (6)
Acinetobacter baumannii (5)
human gut metagenome (5)
Homo sapiens (5)
hot springs metagenome (4)
Enterobacteria phage T6 (3)
phage metagenome (3)
Caulobacter vibrioides (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
insect gut metagenome (3)
Salmonella enterica subsp. enterica (3)
freshwater metagenome (3)
Staphylococcus aureus (3)
Enterococcus faecium (3)
Salmonella phage KKP1402 (2)
Bacillus phage vB_BanS-Tsamsa (2)
Staphylococcus phage sp. (2)
Acinetobacter phage sp. (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Salmonella phage sp. (2)

Repository

ENA (1416)
geo (63)
biostudies-arrayexpress (46)
pride (35)
MetaboLights (13)
EGA (6)
iProX (2)
MassIVE (2)
BioModels (1)

Tissue

Cell culture (6)
Cell suspension culture (2)
Urine (1)
Dendritic cell (1)
Primary cell (1)
B cell (1)
Blood cell (1)
T cell (1)

Disease

Colorectal Neoplasms, Hereditary Nonpolyposis (1)
Urinary tract infection (1)
Lymphoma (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (13)
Mass spectrometry (9)
Data-dependent acquisition (8)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (3)
SWATH MS (3)
Data-independent acquisition (3)
NMR spectroscopy (1)
HDMSE (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - alternating - reverse-phase (2)
Novogene NGS DNA Library Prep Set (Cat No.PT004) (1)
TruSeq Nano DNA Low Throughput library preparation Kit (Illumina, San Diego, USA, REF#20015964) (1)
PureGene DNA extraction Kit (Qiagen) (1)
PEG8000, NaCl, DNase, Benzonase, EDTA, SDS (1)
PromethION (1)
Ultracentrifuge (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
MinION (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - (1)
Liquid Chromatography MS - positive - (1)
Diode array detection MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating (1)
Bruker (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (28)
2026 (22)
2024 (16)
2023 (13)
2014 (9)
2016 (8)
2010 (8)
2022 (7)
2021 (6)
2013 (5)
2017 (4)
2015 (4)
2012 (4)
2011 (4)
2009 (4)
2008 (4)
2020 (4)
2007 (3)
2019 (3)
2018 (3)
2005 (2)
2006 (1)

CHEBI ID

CHEBI:17568 (5)
CHEBI:17368 (5)
CHEBI:15676 (4)
CHEBI:17562 (4)
CHEBI:17361 (4)
CHEBI:17748 (4)
CHEBI:15891 (4)
CHEBI:15603 (4)
CHEBI:17295 (4)
CHEBI:34690 (3)
CHEBI:3219 (3)
CHEBI:17401 (3)
CHEBI:10049 (3)
CHEBI:28866 (3)
CHEBI:9123 (3)
CHEBI:28864 (3)
CHEBI:29013 (3)
CHEBI:17302 (3)
CHEBI:36491 (3)
CHEBI:28997 (3)
CHEBI:16356 (3)
CHEBI:37574 (3)
CHEBI:17768 (3)
CHEBI:17431 (3)
CHEBI:17992 (3)
CHEBI:30805 (3)
CHEBI:545687 (3)
CHEBI:17537 (3)
CHEBI:15784 (3)
CHEBI:16264 (3)

Metabolite Name

Uracil (4)
Melibiose (4)
Oleic acid (4)
Dodecanoic acid (4)
Adenine (4)
Myristic acid (4)
Cytidine (4)
L-Phenylalanine (4)
Inosine (4)
Hypoxanthine (4)
Bupropion (3)
Xanthosine 5-triphosphate (3)
2-Methoxy-estradiol-17b 3-glucuronide (3)
Thiamine monophosphate (3)
Pentadecanal (3)
Agmatine (3)
Palmitaldehyde (3)
Tobramycin (3)
Cytidine monophosphate (3)
FAD (3)
AMP (3)
Thymine (3)
Pyroglutamic acid (3)
Myristoleic acid (3)
Carnosine (3)
Ornithine (3)
L-Arginine (3)
Succinic acid (3)
4-Hydroxybenzoic acid (3)
Palmitoleic acid (3)

First Public Date

2013 (465)
2026 (160)
2024 (157)
2025 (135)
2023 (100)
2022 (74)
2021 (67)
2020 (59)
2019 (44)
2014 (43)
2018 (34)
2017 (34)
2015 (21)
2016 (15)
2012 (8)

Modelling Approach

Ordinary differential equation model (1)

Study status

Recruiting (1)

Lab affiliation

European Molecular Biology Laboratory Heidelberg (1)
Centre to Impact AMR, Monash University; Clayton, 3800, Australia Infection Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University; Clayton, 3800, Australia (1)
Mass Spectrometry and Proteomics Core Facility, National Microbiology Laboratory, Public Health Agency of Canada 1015 Arlington Street, Winnipeg, Manitoba, Canada R3E 3R2 (1)
National Microbiology Laboratory, Public Health Agency of Canada Mass Spectrometry and Proteomics Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectroscopy Core Facility (1)
National Microbiology Laboratory, Public Health Agency of Canada Proteomics and Mass Spectrometry Core Facility (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Center for Structural Biology, Vlaams Instituut voor Biotechnologie and Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussel, Belgium (1)
Infection & Immunity Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University, Clayton, Australia (1)
The Mina and Everard Goodman Faculty of Life Sciences Bar-Ilan University Ramat-Gan 52900, Israel (1)
Lab head of Mass Spectrometry Laboratory, Intercollegiate Faculty of Biotechnology University of Gdańsk and Medical University of Gdańsk, Abrahama 58, 80-307 Gdańsk, Poland (1)
Institute of Translational Medicine, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland (1)
1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
Bavarian Center for Biomolecular Mass Spectrometry Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94403, USA Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94403, USA Innovative Genomics Institute, Berkeley, CA, USA (1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch (1)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (1)
Technical University of Denmark (1)
Laboratoire des bactériophages et de phagothérapie, CRISP, CHUV, Lausanne, Switzerland (1)
Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Freising, TU Munich (1)
Division of Gene Technology, KU Leuven, B-3001 Leuven, Belgium (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, System Biology Laboratory (1)
Principle investigator (1)
Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA (1)
George Mason University (1)
Plant and Microbial Biology Department, Kleiner Lab, North Carolina State University, USA (1)
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, Brazil (1)

IsPrivate

False (1)

Classification

bacteria (349)
viruses (160)

Study type

Transcription profiling by array (21)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA (7)
DNA-seq (4)
Unknown experiment type (2)
Other (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
Observational patient registry (1)

Release Date

2022 (430)
2023 (394)
2021 (392)
2024 (371)
2025 (370)
2020 (311)
2019 (250)
2018 (196)
2017 (177)
2016 (137)
2015 (134)
2014 (108)
2013 (106)
2012 (104)
2011 (84)
2026 (49)
2010 (46)
2009 (35)
2007 (33)
2008 (29)
2005 (26)
2004 (18)
2003 (18)
2006 (16)
2002 (14)
2001 (14)
1998 (11)
1999 (10)
2000 (5)

Location

France (1)

Previous page
1 / 543
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 543
Next page

Sort by:

Relevance

Page size

Lytic infection of Lactococcus lactis by bacteriophages Tuc2009 and c2 trigger alternative transcriptional host responses

This study analysed the temporal transcriptional response of L. lactis UC509.9 undergoing infection with either Tuc2009 or c2, representing phages of two different species (P335 and c2, respectively) of the family Siphoviridae. For the first time, to our knowledge, both DNA microarrays of the host a...

ORGANISM(S): Lactococcus lactis subsp. cremoris UC509.9

2013-06-27 | E-GEOD-45655 | biostudies-arrayexpress

Biological characterization of virulent therapeutic bacteriophage PAK_P3 infecting Pseudomonas aeruginosa.

We have isolated and characterized several bacteriophages infecting Pseudomonas aeruginosa distantly related to Felix O1 virus and proposed they form a new subfamily named Felixounavirinae. The infectious cycle of bacteriophages belonging to this subfamily has not been studied yet in terms of gene e...

ORGANISM(S): Pseudomonas aeruginosa

2016-07-20 | E-GEOD-76513 | biostudies-arrayexpress

Isolation and characterization of bacteriophages from clinical enterohemorrhagic E. coli strains

Temperate bacteriophages play a pivotal role in the biology of their bacterial host. Of particular interest are bacteriophages infecting enterohemorrhagic E. coli (EHEC) due to their significant contribution in the pathogenicity of these pathogens, most notably by encoding the key virulence factor o...

ORGANISM(S): Bacteriophage sp.

2025-08-26 | PXD061229 | Pride