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MetabolomicsIntestinal Lachnospiraceae bacterium-derived Propionate Inhibits the Progression of Clear Cell Renal Cell Carcinoma
Gut microbiota has been reported to be associated with the development of various diseases, however, its interaction with clear cell renal cell carcinoma (ccRCC) remains unknown. To investigate the potential relationship between gut microbiota alteration and ccRCC development, we analyze feces from ...
2025-06-13 | MTBLS12539 | MetaboLights
MetabolomicsMetabolomics of marine bacterium Roseovarius nubinhibens ISM

To analyze the metabolism of marine bacterium Roseovarius nubinhibens ISM, metabolomics of the control strain (Con) WY10-pCtrl (pcaH Gln40*, pcaG Gln3*) and the experimental strain (Exp) WY10-pRn (pcaH Gln40*, pcaG&nb...

2026-08-27 | MTBLS12392 | MetaboLights
MetabolomicsGrowth Substrate and Prophage Induction Collectively Influence Metabolite and Lipid Profiles in a Marine Bacterium

Bacterial growth substrates influence a variety of biological functions, including the biosynthesis and regulation of lipid intermediates. The extent of this rewiring is not well understood nor has it been considered in the context of virally-infected cells. Here, we use a one-host-two-temperate ...

2022-08-04 | MTBLS5345 | MetaboLights
MetabolomicsCreation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti
Many bacteria, often associated with eukaryotic hosts and of relevance for biotechnological applications, harbor a multipartite genome composed of more than one replicon. Biotechnologically relevant phenotypes are often encoded by genes residing on the secondary replicons. A synthetic biology approa...
2021-03-17 | MTBLS576 | MetaboLights
MetabolomicsNutrient depletion and systems-wide metabolic shifting in polymer-producing wastewater bacterium

Inorganic nutrient deficiency stimulates polymer synthesis in bacterial producers relevant to wastewater treatment and biotechnology, but the metabolic mechanisms are poorly understood. Here, using a quantitative multi-omics analysis of the wastewater isolate Comamonas testosteroni durin...

2026-09-09 | MTBLS12449 | MetaboLights
MetabolomicsAromatic amino acid metabolism by the anaerobic gut bacterium Clostridium sporogenes
Not available
ORGANISM(S): Mus musculus 
ST001606 | MetabolomicsWorkbench
MetabolomicsAromatic amino acid metabolism by the anaerobic gut bacterium Clostridium sporogenes (part-II)
Not available
ORGANISM(S): Mus musculus 
ST001633 | MetabolomicsWorkbench
MetabolomicsCo-occurrence of direct and indirect extracellular electron transfer mechanisms during electroactive respiration in a dissimilatory sulfate reducing bacterium

Understanding the extracellular electron transfer mechanisms of electroactive bacteria could help determine their potential in microbial fuel cells (MFCs) and their microbial syntrophy with redox-active minerals in natural environments. However, the mechanisms of extracellular electron transfer t...

2024-12-06 | MTBLS11447 | MetaboLights
TranscriptomicsGene expression dynamics in Beijerinckiaceae bacterium RH AL1 in response to different lanthanum compounds and different lanthanide-containing minerals
We investigated lanthanide (Ln) utilization in Beijerinckiaceae bacterium RH AL1, which requires light Lns (La–Nd) for methanol oxidation. The strain was grown with methanol as the carbon and energy source and with Ln sources including natural minerals (apatite, bastnäsite, gadolinite, loparite, mon...
ORGANISM(S): Beijerinckiaceae bacterium 
2026-02-01 | E-MTAB-15640 | biostudies-arrayexpress
TranscriptomicsFunction of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
The sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough possesses four periplasmic hydrogenases to facilitate the oxidation of molecular hydrogen. These include an [Fe], a [NiFeSe] and two [NiFe] hydrogenases encoded by the hyd, hys, hyn1 and hyn2 genes, respectively. In order to underst...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2010-06-10 | E-GEOD-8137 | biostudies-arrayexpress
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