Bacteroidetes - OmicsDI

Browse
Submit Data
Databases
API
Help

6990 Results

Show all Save search Copy query

Show results for

Unknown (5732)
Genomics (1104)
Transcriptomics (55)
Proteomics (53)
Metabolomics (36)
Other (10)

Organisms

Mus musculus (26)
Bacteria (8)
Bacteroides thetaiotaomicron (6)
Bacteroides fragilis 638R (4)
mouse gut metagenome (4)
Homo sapiens (3)
Agathobacter rectalis (3)
Bacteroides cellulosilyticus (2)
Dorea longicatena DSM 13814 (2)
uncultured bacterium (2)
mixed sample (2)
Parabacteroides distasonis (2)
Phocaeicola vulgatus (2)
Lachnospira eligens (2)
Methanobrevibacter smithii (2)
feces metagenome (2)
environmental samples (1)
Porphyromonas gingivalis (1)
Subdoligranulum variabile (1)
Flagellimonas taeanensis (1)
Lactobacillus delbrueckii (1)
Bacteroides sp. WH2 (1)
Thomasclavelia spiroformis DSM 1552 (1)
Faecalibacterium prausnitzii M21/2 (1)
[Clostridium] scindens ATCC 35704 (1)
[Ruminococcus] torques ATCC 27756 (1)
Blautia obeum ATCC 29174 (1)
Phocaeicola vulgatus ATCC 8482 (1)
Bacteroides uniformis ATCC 8492 (1)
Bacteroides ovatus ATCC 8483 (1)

Organisms

mouse gut metagenome (24)
Mus musculus (17)
human gut metagenome (13)
soil metagenome (12)
marine metagenome (10)
pig gut metagenome (7)
gut metagenome (7)
Bacteria (6)
freshwater metagenome (5)
feces metagenome (5)
Homo sapiens (5)
Bacteroides acidifaciens (4)
synthetic metagenome (4)
wastewater metagenome (4)
uncultured bacterium (4)
chicken gut metagenome (3)
bovine gut metagenome (3)
Sus scrofa (3)
sediment metagenome (3)
Bacteroides fragilis 638R (2)
Bacteroidetes bacterium SCGC AD-311-C03 (2)
musk metagenome (2)
Bacteroidetes bacterium SCGC AD-308-D03 (2)
Bacteroidetes bacterium SCGC AD-308-A09 (2)
Bacteroidetes bacterium SCGC AD-305-J03 (2)
Bacteroidetes bacterium SCGC AD-305-A20 (2)
Rhinella marina (2)
Bacteroidota bacterium (2)
termite gut metagenome (2)
Ageratina adenophora (2)

Repository

ENA (1098)
geo (47)
pride (41)
MetaboLights (31)
biostudies-arrayexpress (21)
MassIVE (10)
GNPS (5)
iProX (3)
EGA (1)
NODE (1)

Tissue

Feces (5)
Colon (3)
Cell culture (3)
Rumen (1)
Intestinal epithelial cell (1)
Prokaryotic cell (1)
Root (1)

Disease

Periodontitis (2)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (22)
Mass spectrometry (21)
Bottom-up proteomics (9)
Mass spectrometry assay (8)
Gel-based experiment (7)
Data-dependent acquisition (3)
NMR spectroscopy (2)
Metaproteomics (2)
Data-independent acquisition (2)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (10)
6550 iFunnel Q-TOF LC/MS (4)
LTQ Orbitrap Elite (4)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - reverse-phase (3)
Q Exactive (2)
Orbitrap Fusion (2)
5975C Series GC/MSD (Agilent) (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - negative - HILIC (2)
Liquid Chromatography MS - positive - HILIC (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Illumina MiSeq (1)
Agilent 6545 series quadrupole (1)
TimsTOF HT (1)
TripleTOF 5600 (1)
Flow injection analysis MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (26)
2022 (17)
2024 (12)
2023 (12)
2018 (12)
2013 (11)
2026 (11)
2020 (8)
2015 (7)
2016 (6)
2014 (6)
2021 (6)
2009 (5)
2019 (5)
2012 (4)
2011 (4)
2010 (4)
2017 (2)

CHEBI ID

CHEBI:16015 (5)
CHEBI:17596 (5)
CHEBI:17368 (5)
CHEBI:166830 (4)
CHEBI:75016 (4)
CHEBI:75011 (4)
CHEBI:74750 (4)
CHEBI:49033 (4)
CHEBI:16040 (4)
CHEBI:73514 (4)
CHEBI:17754 (4)
CHEBI:68433 (4)
CHEBI:17821 (4)
CHEBI:17780 (4)
CHEBI:27248 (4)
CHEBI:17568 (4)
CHEBI:17203 (4)
CHEBI:15971 (4)
CHEBI:16919 (4)
CHEBI:183039 (3)
CHEBI:177093 (3)
CHEBI:179367 (3)
CHEBI:141146 (3)
CHEBI:138515 (3)
CHEBI:173503 (3)
CHEBI:100147 (3)
CHEBI:76071 (3)
CHEBI:16795 (3)
CHEBI:141429 (3)
CHEBI:9440 (3)

Metabolite Name

Inosine (10)
Uracil (8)
Taurine (8)
Xanthine (7)
Uridine (7)
Creatine (7)
Hypoxanthine (7)
Corticosterone (6)
L-Proline (6)
Kynurenic acid (6)
Biliverdin (6)
L-Histidine (6)
Glycocholic acid (6)
Cytosine (6)
Azelaic acid (6)
Guanosine (6)
L-Valine (6)
L-Methionine (6)
L-Phenylalanine (6)
Citrulline (5)
Syringic acid (5)
Phytosphingosine (5)
Daidzein (5)
Gamma-Glutamyltyrosine (5)
Allantoin (5)
Isophorone (5)
Cortisone (5)
Jasmonic acid (5)
Cholic acid (5)
Quinic acid (5)

First Public Date

2020 (118)
2019 (101)
2021 (99)
2024 (91)
2022 (85)
2017 (82)
2018 (78)
2025 (74)
2023 (69)
2013 (66)
2014 (64)
2016 (63)
2015 (56)
2026 (38)
2012 (6)
2011 (5)
2010 (3)

Classification

bacteria (11)
viruses (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (4)
Other (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)

Release Date

2022 (798)
2021 (752)
2020 (621)
2023 (553)
2018 (433)
2019 (425)
2024 (397)
2025 (344)
2017 (320)
2016 (262)
2015 (210)
2014 (160)
2013 (125)
2012 (83)
2011 (72)
2009 (39)
2010 (34)
2026 (27)
2008 (26)
2006 (26)
2007 (24)
2005 (12)
2004 (8)
2002 (1)
2001 (1)

Lab affiliation

Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (3)
Quantitative Proteomics Proteome Center Tübingen Universität Tübingen Auf der Morgenstelle 15 72076 Tübingen (3)
Pacific Northwest National Laboratory, USA (2)
University of Namur Research Unit in Biology of Microorganisms (URBM) Namur Research Institute for Life Sciences (NARILIS) Belgium (1)
Professor in Environmental Microbiology and Biotechnology,Section for Biotechnology Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK. (1)
Quantitative Proteomics Proteome Center Tuebingen University Tuebingen Auf der Morgenstelle 15 72076 Tuebingen (1)
NuGut Research Platform, School of Nutrition Sciences, Faculty of Health Sciences, University of Ottawa, Ottawa, ON K1N 6N5, Canada. (1)
Chalmers University of Technology, Department of Biology and Biological Engineering, Division of Industrial Biotechnology (1)
Department of Biology and Technology, Kunming University, Kunming, China (1)
Newcastle University Biosciences Institute Cookson Building Newcastle University NE2 4HH United Kingdom (1)
Department of Microbiology, The Ohio State University, USA (1)
Proteomics Laboratory, Porto Conte Ricerche, Alghero, Italy (1)
Melbourne Dental School, University of Melbourne Parkville, Victoria, Australia (1)
Department of Biochemistry, University of Oxford, Oxford, United Kingdom (1)
State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, China (1)
School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, UK (1)
The Centre for Microbiome and Inflammatory Research UBC Okanagan (1)
IDEAS Laboratory:Center for Microbiome & Inflammatory Research UBC Okanagan (1)
MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (1)
University of Namur Research Unit in Biology of Microorganisms (URBM) Namur Research Institute for Life Sciences (NARILIS) Belgium. (1)
Department of Pathology and Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305 (1)
Research Unit in Biology of Microorganisms (URBM), Namur Research Institute for life Sciences (Narilis), University of Namur, Namur, Belgium (1)
Department of Biomedical Sciences, University of Sassari, Italy (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)
Porto Conte Ricerche, Science and Technology Park of Sardinia, Tramariglio, Alghero, Italy (1)
University of Greifswald, Insititute of Pharmacy, Department Pharmaceutical Biotechnology (1)
University of Greifswald, Institute of Biochemistry, Department of Biotechnology and Enzyme Catalysis (1)
Norwegian University of Life Sciences (1)
Newcastle University Biosciences Institute Cookson Building Newcastle University NE2 4HH United Kingdom (1)

Tags

pathogen (12)
pathogen:bacterium (11)
xref:PubMed:17183312 (7)
xref:PubMed:23976882 (4)
wastewater (4)
xref:PubMed:30042191 (3)
xref:PubMed:19321416 (3)
xref:PubMed:24987952 (2)
xref:PubMed:24732106 (2)
xref:PubMed:35614182 (2)
xref:PubMed:24402126 (2)
xref:PubMed:27353652 (2)
xref:PubMed:23239972 (2)
xref:PubMed:34954656 (1)
xref:PubMed:30030441 (1)
xref:PubMed:35926021 (1)
xref:PubMed:37403161 (1)
xref:PubMed:36077904 (1)
xref:PubMed:25819618 (1)
xref:PubMed:34463991 (1)
xref:PubMed:33167991 (1)
xref:PubMed:35928781 (1)
xref:PubMed:34782025 (1)
xref:PubMed:34162928 (1)
xref:PubMed:31646088 (1)
xref:PubMed:27056560 (1)
xref:PubMed:29332945 (1)
xref:PubMed:30904077 (1)
xref:PubMed:30610738 (1)
xref:PubMed:26829039 (1)

Previous page
1 / 699
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 699
Next page

Sort by:

Relevance

Page size

10

Bacteroidetes oral taxon 274

Bacteroidetes oral taxon 274 overview

PRJNA42037 | ENA

Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species, Positive Ionization Polarity

Paper title: Insights into the antimicrobial activities and metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) species from the rare marine biosphere Author List: Silva, SG, Paula, P, da Silva, J.P, Mil-Homens, D, Teixeira, MC, Fialho, A, Costa, R, Keller-Costa, T PubMedID: Brief descripti...

ORGANISM(S): Aquimarina (ncbitaxon:290174)

2022-05-26 | MSV000089550 | MassIVE

Multi-Omics Unveils Strain-Specific Neuroactive Metabolite Production Linked to Inflammation Modulation by Bacteroides and Their Vesicles

18 Bacteroidetes isoaltes were analyzed for their neuroactive potentail using un-targeted and targeted metabolomics. The bacteria were grown to stationary phase, the supernatant was separated and purified using 0.22 um filter. The metabolome from the supernatant was extracted using standard Metha...

2025-08-12 | MTBLS10526 | MetaboLights

Bacteroidetes bacterium JGI MCM14ME168

Bacteroidetes bacterium JGI MCM14ME168 Genome sequencing

PRJNA322910 | ENA

Bacteroidetes bacterium JGI MCM14ME196

Bacteroidetes bacterium JGI MCM14ME196 Genome sequencing

PRJNA322911 | ENA

Bacteroidetes bacterium JGI MCM14ME128

Bacteroidetes bacterium JGI MCM14ME128 Genome sequencing

PRJNA322912 | ENA

Bacteroidetes bacterium JGI MCM14ME016

Bacteroidetes bacterium JGI MCM14ME016 Genome sequencing

PRJNA322913 | ENA

Bacteroidetes bacterium JGI MCM14ME134

Bacteroidetes bacterium JGI MCM14ME134 Genome sequencing

PRJNA322906 | ENA

Bacteroidetes bacterium JGI MCM14ME166

Bacteroidetes bacterium JGI MCM14ME166 Genome sequencing

PRJNA322907 | ENA

Bacteroidetes bacterium JGI MCM14ME088

Bacteroidetes bacterium JGI MCM14ME088 Genome sequencing

PRJNA322908 | ENA

Previous page
1 / 699
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 699
Next page

Sort by:

Relevance

Page size

10

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data