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TranscriptomicsMeasurement of mRNA decay in exponentially growing cultures of the extremely halophilic euryarchaeon Halobacterium salinarum NRC-1 after blocking transcription with actinomycin D
mRNA half-lives in exponentially growing cultures of the extremely halophilic euryarchaeon Halobacterium salinarum NRC-1
ORGANISM(S): Halobacterium salinarum 
2007-07-31 | E-MEXP-1088 | biostudies-arrayexpress
ProteomicsPancreatic beta cell proteome with increased proliferation in NOD mice
We investigated the pancreatic beta cell proteome changes in NOD-LIRKO vesus NOD where beta cell mass was enhanced early in life. Proteomics data is derived from FACS-sorted beta cells at 8 weeks and 12 weeks.
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2019-03-14 | MSV000083576 | MassIVE
TranscriptomicsChIP-chip with antibodies for histone 3 lysine 4 trimethylation, histone 3, and PolII in Mll1+/+ and Mll1-/- MEFs
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II A common landmark of activated genes is the presence of trimethylation on lysine 4 of histone H3 (H3K4) ...
ORGANISM(S): Mus musculus 
2010-06-21 | E-GEOD-18264 | biostudies-arrayexpress
TranscriptomicsAbsolute expression level of Saccharomyces cerevisiae genes
Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces cerevisiae genes Total RNA was collected in mid-log phase from Saccharomyces cerevisiae cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridize...
ORGANISM(S): Saccharomyces cerevisiae 
2010-07-05 | E-GEOD-22204 | biostudies-arrayexpress
TranscriptomicsGlobal analysis of H3K4 methylation
This SuperSeries is composed of the following subset Series: GSE18261: Expression analysis on Mll1+/+ and Mll1-/- MEFs GSE18262: ChIP-chip with antibodies for histone 3 lysine 4 trimethylation and histone 3 in Mll1+/+ and Mll1-/- MEFs GSE18263: ChIP-chip with antibodies for histone 3 lysine 4 trimet...
ORGANISM(S): Mus musculus 
2009-10-20 | E-GEOD-18258 | biostudies-arrayexpress
GenomicsThe effect of bound RSC/nucleosome complex on chromatin architecture and gene expression at the GAL genes of yeast
How is chromatin architecture established and what role does it play in activation of transcription? We show that a regulatory locus in yeast (the UASg) bears, in addition to binding sites for the activator Gal4, sites bound by the protein RSC. RSC tightly positions a nucleosome, evidently partial...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-01 | E-GEOD-20078 | biostudies-arrayexpress
TranscriptomicsGene expression arrays comparing Kluyveromyces lactis wild-type a cells to MATa2 knock-out a cells and wild-type alpha cells to MATalpha2 knock-out alpha cells
We examine how different transcriptional network structures can evolve from a common, ancestral network. We show that regulatory protein modularity, conversion of one cis-regulatory sequence to another, distribution of binding energy among protein-protein and protein-DNA interactions, and exploitati...
ORGANISM(S): Kluyveromyces lactis 
2012-06-29 | E-GEOD-39027 | biostudies-arrayexpress
TranscriptomicsExpression analysis on Mll1+/+ and Mll1-/- MEFs
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II A common landmark of activated genes is the presence of trimethylation on lysine 4 of histone H3 (H3K4) ...
ORGANISM(S): Mus musculus 
2009-10-20 | E-GEOD-18261 | biostudies-arrayexpress
MetabolomicsAnalysis of sex-specific lipid metabolism of Plasmodium falciparum points to the importance of sphingomyelin for gametocytogenesis
Male and female Plasmodium falciparum gametocytes are the parasite lifecycle stage responsible for transmission of malaria from the human host to the mosquito vector. Not only are gametocytes able to survive in radically different host environments, but they are also precursors for male and female g...
2022-04-05 | MTBLS4137 | MetaboLights
MetabolomicsRapid UHPLC-MS metabolite profiling and phenotypic assays reveal genotypic impacts of nitrogen supplementation in oats
INTRODUCTION: Oats (Avena sativa L.) are a whole grain cereal recognised for their health benefits and which are cultivated largely in temperate regions providing both a source of food for humans and animals, as well as being used in cosmetics and as a potential treatment for a number of...
2020-06-11 | MTBLS804 | MetaboLights
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