Banerjee N N - OmicsDI

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Unknown (1797)
Proteomics (71)
Transcriptomics (35)
Genomics (12)
Metabolomics (4)

Organisms

Homo sapiens (51)
Mus musculus (18)
Rattus norvegicus (3)
Mus musculus domesticus (2)
mouse gut metagenome (2)
Mycobacterium tuberculosis H37Rv (2)
Escherichia coli (2)
Severe acute respiratory syndrome coronavirus 2 (2)
gut metagenome (1)
Shewanella oneidensis MR-1 (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Drosophila melanogaster (1)
Sus scrofa domesticus (1)
Bat coronavirus RaTG13 (1)
Eptesicus fuscus (1)
Prevotella corporis DSM 18810 = JCM 8529 (1)
Rattus rattus (1)

Repository

biostudies-arrayexpress (42)
pride (35)
MassIVE (32)
EGA (6)
MetaboLights (4)
PanoramaPublic (2)
iProX (1)

Tissue

Cell culture (10)
Brain (4)
Epithelial cell (3)
Blood plasma (2)
Kidney (2)
Adipose tissue (1)
Blood vessel (1)
Electrically active cell (1)
HEK-293T cell (1)
Heart (1)
LNCaP cell (1)
Leukocyte (1)
Liver (1)
Lymph node (1)
Macrophage (1)
Pancreas (1)
Permanent cell line cell (1)
Pituitary gland (1)
Pluripotent stem cell (1)
Primary cell (1)
Prostate gland (1)
Stem cell (1)
Trophoblast (1)

Disease

Disease free (3)
COVID-19 (2)
Cardiovascular system disease (2)
Amyotrophic lateral sclerosis (1)
Diabetes mellitus (1)
Lymphoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Obesity (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
Mass spectrometry (4)
Bottom-up proteomics (4)
Aperio (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Data-independent acquisition (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Orbitrap Fusion (31)
Illumina MiSeq (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Computer (1)
Applied Biosciences (1)
Applied Biosystems (1)
Mo-Bio Powersoil extraction kit (1)
Experimental (1)
None (1)
GenePix 4000A [Axon Instruments] (1)
None (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)

Publication Date

2025 (32)
2022 (12)
2023 (9)
2024 (8)
2015 (7)
2013 (6)
2026 (6)
2021 (6)
2020 (5)
2016 (4)
2019 (3)
2012 (3)
2010 (3)
2018 (2)
2011 (2)
2009 (2)
2008 (2)
2006 (2)
2007 (1)
2005 (1)

CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

Study type

Transcription profiling by array (22)
DNA-seq (5)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (217)
2023 (205)
2024 (198)
2025 (194)
2021 (191)
2020 (148)
2018 (95)
2019 (92)
2016 (86)
2017 (85)
2015 (75)
2013 (48)
2014 (46)
2012 (34)
2026 (28)
2010 (21)
2011 (19)
2008 (17)
2009 (16)
2007 (4)
2006 (4)
2005 (4)
2004 (4)
2003 (3)
2002 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (2)
1- Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, SK, Canada (1)
Associate Professor Regional Centre for Biotechnology (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Center for Neuroscience Research, Children's National Hospital, Washington, DC. 20010 USA (1)
Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
Chemistry Department, University of Minnesota (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Pathology and Laboratory Medicine, College of Medicine, University of Saskatchewan, Canada (1)
Departmentof Biochemistry & Structural Biology Lund University, Sweden (1)
Director, CSIR-INDIAN INSTITUTE OF CHEMICAL BIOLOGY, KOLKATA,INDIA (1)
Functional Proteomics Institute of Cancer Research (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
ICR (1)
IMSB, ETH Zurich (1)
Institute for Systems Biology, Seattle, WA, USA (1)
NIAID, NIH (1)
Oslo University, Department of Biosciences, Section for Biochemistry and Molecular Biology, Oslo, Norway (1)
Prof. Sanjeeva Srivastava, PhD, FRSB, FRSC Professor and Group Head Department of Biosciences & Bioengineering Indian Institute of Technology Bombay Mumbai – 400076, India Phone: +91-22-2576-7779 Email: sanjeeva@iitb.ac.in (1)
Professor of Biomolecular Chemistry at the University of Wisconsin - Madison (1)
Professor of Oncology and Biochemistry Associate Director: Center for Metabolomic Studies. Georgetown University Medical Center Washington, DC, USA 20007 (1)
Proteomics Core Facility, University of Gothenburg (1)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (1)
Proteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai-400076, India. (1)

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Selective Incision of the alpha-N-Methyl-Formamidopyrimidine Anomer by Escherichia coli Endonuclease IV.

Not available

S-EPMC2925382 | biostudies-literature

Poly[bis-(N,N-dimethyl-formamide-κO)(μ(4)-naphthalene-1,5-disulfonato)magnesium(II)].

Not available

S-EPMC2979591 | biostudies-literature

HAUSP deubiquitinates and stabilizes N-Myc in neuroblastoma.

Not available

S-EPMC5091299 | biostudies-literature

Linear Relationships Between Total Hydrocarbons and Benzene, Toluene, Ethylbenzene, Xylene, and n-Hexane during the Deepwater Horizon Response and Clean-up.

Not available

S-EPMC8989044 | biostudies-literature

SARS_CoV-2 substrate profiling in HEK-293 cell proteomes

To profile the human substrate degradome of the SARS-CoV-2 main viral protease by exposingnative proteome extracts from human embryonic kidney (HEK-293) cells (N = 3) to 3CLpro cleavage. Then, N Terminal Amine Labeling of Substates (TAILS) was used to identify the substrates. Here, heavy [+34] isoto...

ORGANISM(S): Homo sapiens (Human)

2021-11-03 | PXD026797 | Pride

Identification of differentially expressed microRNAs in liver tissue of Hepatitis B virus (HBV) infected hepatocellular carcinoma (HCC)

Global expression profiling of miRNAs in liver tissue of HBV infected HCC and chronic hepatitis B (CHB) with no fibrosis was evaluated. A total of 40 differentially expressed miRNAs were identified in HCC. Top 10 miRNAs are validated in more numbers of HCC tisuues by qRT PCR. Finally six miRNAs (miR...

ORGANISM(S): Homo sapiens

2015-04-15 | E-GEOD-67882 | biostudies-arrayexpress

N-glycans in cell survival and death: cross-talk between glycosyltransferases.

Not available

S-EPMC3499948 | biostudies-literature

N-[2-({[1-(4-Chloro-phen-yl)-1H-pyrazol-3-yl]-oxy}meth-yl)phen-yl]-N-meth-oxy-hydrazinecarboxamide.

Not available

S-EPMC3470263 | biostudies-literature

Comparison of Bleo, Asthma, TH2 and Infection Models

Disease-Specific Gene Expression Profiling in Multiple Models of Lung Disease We profiled lung gene expression in 12 mouse models of infection, allergy, and lung injury. A total of 24 transcripts, including many involved in inflammation and immune activation, were differentially expressed in a subs...

ORGANISM(S): Mus musculus

2006-12-30 | E-GEOD-4231 | biostudies-arrayexpress

[4 + 2] cycloadditions of N-alkenyl iminium ions: structurally complex heterocycles from a three-component Diels-Alder reaction sequence.

Not available

S-EPMC2762780 | biostudies-literature

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1919 Results

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