Banerjee S S - OmicsDI

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Unknown (3562)
Proteomics (60)
Transcriptomics (33)
Genomics (15)
Models (4)
Metabolomics (4)
Genomic (1)

Organisms

Homo sapiens (68)
Mus musculus (10)
Rattus norvegicus (5)
Severe acute respiratory syndrome coronavirus 2 (3)
Mus musculus domesticus (2)
mouse gut metagenome (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis H37Rv (2)
Escherichia coli (2)
gut metagenome (1)
Shewanella oneidensis MR-1 (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
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Pseudomonas putida KT2440 (1)
Bat coronavirus RaTG13 (1)
Channa striata (1)
Coccinia grandis (1)
Eptesicus fuscus (1)
Labeo rohita (1)
Prevotella corporis DSM 18810 = JCM 8529 (1)
Rattus rattus (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Organisms

Homo sapiens (3)

Repository

pride (48)
biostudies-arrayexpress (40)
EGA (6)
MassIVE (6)
PanoramaPublic (5)
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dbGaP (1)

Tissue

Cell culture (11)
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Cell suspension culture (2)
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Primary cell (2)
Blood vessel (1)
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Disease

Disease free (4)
COVID-19 (3)
Amyotrophic lateral sclerosis (1)
Cardiovascular system disease (1)
Liver disease (1)
Lung adenocarcinoma (1)
Lymphoma (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (48)
Shotgun proteomics (22)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (7)
Mass spectrometry (4)
Gel-based experiment (3)
SWATH MS (3)
Aperio (1)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

Orbitrap Fusion (5)
Illumina MiSeq (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Applied Biosciences (1)
Applied Biosystems (1)
Mo-Bio Powersoil extraction kit (1)
Experimental (1)
None (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
None (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)

Publication Date

2022 (11)
2025 (10)
2024 (10)
2026 (9)
2023 (9)
2013 (8)
2021 (8)
2020 (7)
2015 (5)
2012 (4)
2010 (4)
2019 (3)
2016 (3)
2011 (3)
2008 (2)
2007 (2)
2018 (2)
2014 (1)
2006 (1)
2005 (1)
2017 (1)

CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

IsPrivate

False (4)

Submitter Keywords

Immuno-oncology (1)

First Public Date

2013 (2)
2014 (1)

Modelling Approach

Ordinary differential equation model (3)
Agent-based model (1)

Study type

Transcription profiling by array (23)
DNA-seq (5)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (2)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (417)
2025 (392)
2023 (371)
2024 (347)
2021 (347)
2020 (278)
2019 (218)
2018 (192)
2017 (174)
2016 (170)
2015 (142)
2014 (131)
2013 (91)
2012 (60)
2011 (57)
2010 (54)
2026 (48)
2009 (39)
2008 (21)
2007 (19)
2006 (12)
2005 (5)
2004 (4)
2002 (4)
2001 (4)
2003 (3)
2000 (1)
1998 (1)

Lab affiliation

Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (3)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (2)
1- Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, SK, Canada (1)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Associate Professor Regional Centre for Biotechnology (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
Chemistry Department, University of Minnesota (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department of Biochemistry and Molecular Genetics, University of Anschutz Medical Campus, Aurora CO (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Departmentof Biochemistry & Structural Biology Lund University, Sweden (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Functional Proteomics Institute of Cancer Research (1)
HHMI and Department of Molecular Biology, Mass General Hospital Department of Systems Biology, Harvard Medical School Broad Institute of MIT & Harvard (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
ICAR- Central Inland Fisheries Research Institute, Fishery Resource and Environmental Management Division, Biochemistry Laboratory, Proteomics Unit, Barrackpore- 700120. Ph- +919230618153 (1)
ICAR-Central Inland Fisheries Research Institute, Fishery Resourse & Environmental Management Division, Biochemistry Lab-1, Proteomics Unit, Barrackpore, Kolkata, India (1)
ICR (1)
IMSB, ETH Zurich (1)
Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, H2W 1R7, Canada Integrated Program in Neuroscience, McGill University, Montréal, QC, H3A 2B4, Canada Division of Experimental Medicine, McGill University, Montréal, QC, H3A 2B2, Canada Department of Anatomy and Cell Biology, McGill University, Montréal, QC, H3A 0C7, Canada (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
NIAID, NIH (1)
Oncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center Utrecht, the Netherland Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Technische Universiteit Delft, Van der Maasweg 9, 2629 HZ Delft, the Netherlands. (1)

Tags

xref:PubMed:17713546 (1)

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PLP-dependent H(2)S biogenesis.

Not available

S-EPMC3193879 | biostudies-literature

Human papillomavirus (HPV) E7 induces prolonged G2 following S phase reentry in differentiated human keratinocytes.

Not available

S-EPMC3083224 | biostudies-literature

Transcription profiling of S. cerevisiae and C. albicans wild type strains or strains deleted for transcription factor encoding genes involved in pleiotropic drug resistance after treatment with different doses of progesterone

This work aimed at analysing the transcriptome response of S. cerevisiae and C. albicans strains, wild type or deleted for transcription factor encoding genes involved in pleiotropic drug resistance, to three different doses of progesterone, inoculated for three different time periods.

ORGANISM(S): Saccharomyces cerevisiae

2007-11-13 | E-TABM-345 | biostudies-arrayexpress

Identification of Scaffold/Matrix Attachment (S/MAR) like DNA element from the gastrointestinal protozoan parasite Giardia lamblia.

Not available

S-EPMC3017767 | biostudies-literature

In vitro reconstitution reveals substrate selectivity of protein S-acyltransferases.

Not available

S-EPMC12018989 | biostudies-literature

S-glutathionylation enhances human cystathionine β-synthase activity under oxidative stress conditions.

Not available

S-EPMC4307034 | biostudies-literature

Functional compensation of glutathione S-transferase M1 (GSTM1) null by another GST superfamily member, GSTM2.

Not available

S-EPMC3776957 | biostudies-literature

DNA damage responses by human ELG1 in S phase are important to maintain genomic integrity.

Not available

S-EPMC2880862 | biostudies-literature

Global Proteomics Analysis of S-023-0996 Treatment in Human Breast Cancer Cell line MDA-MB-231

To elucidate the mechanism underlying the anticancer activity of S-023-0996, global proteomic analysis was performed in human breast cancer cells. Mass spectrometry-based proteomic profiling was carried out in MDA-MB-231 cells following treatment with four experimental groups: Tazemetostat (Taz), Ge...

ORGANISM(S): Homo sapiens (Human)

2026-09-03 | PXD080173 | Pride

Network analysis reveals common host protein/s modulating pathogenesis of neurotropic viruses.

Not available

S-EPMC5007645 | biostudies-literature

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3679 Results

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