Banerjee T T - OmicsDI

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Unknown (1408)
Proteomics (33)
Transcriptomics (30)
Genomics (11)
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Homo sapiens (40)
Mus musculus (14)
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mouse gut metagenome (2)
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gut metagenome (1)
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Vibrio cholerae O1 biovar El Tor str. N16961 (1)

Repository

biostudies-arrayexpress (37)
pride (28)
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Technology Type

Mass Spectrometry (28)
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CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

IsPrivate

False (2)

Submitter Keywords

Immuno-oncology (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (20)
DNA-seq (5)
RNA-seq of coding RNA (4)
Transcription profiling by SAGE (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (165)
2025 (156)
2021 (155)
2023 (153)
2024 (143)
2020 (99)
2019 (88)
2018 (81)
2017 (71)
2015 (66)
2016 (65)
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2013 (37)
2011 (21)
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2009 (20)
2012 (18)
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2007 (7)
2006 (3)
2005 (2)
2004 (2)
2003 (1)
2002 (1)
2001 (1)

Lab affiliation

Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (2)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (2)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Associate Professor Regional Centre for Biotechnology (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3 (1)
Center for Blood Research, Life Sciences Centre, University of British Columbia; Vancouver, British Columbia, Canada, V6T 1Z3. (1)
Chemistry Department, University of Minnesota (1)
Department of Biochemistry and Molecular Genetics, University of Anschutz Medical Campus, Aurora CO (1)
Departmentof Biochemistry & Structural Biology Lund University, Sweden (1)
Functional Proteomics Institute of Cancer Research (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
ICAR- Central Inland Fisheries Research Institute, Fishery Resource and Environmental Management Division, Biochemistry Laboratory, Proteomics Unit, Barrackpore- 700120. Ph- +919230618153 (1)
Institute for Systems Biology, Seattle, WA, USA (1)
NIAID, NIH (1)
Prof. Sanjeeva Srivastava, PhD, FRSB, FRSC Professor and Group Head Department of Biosciences & Bioengineering Indian Institute of Technology Bombay Mumbai – 400076, India Phone: +91-22-2576-7779 Email: sanjeeva@iitb.ac.in (1)
Professor in Molecular Genetics and Microbiology Duke University School of Medicine Durham, NC (1)
Proteomics Core Facility, University of Gothenburg (1)
Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA USA J. David Gladstone Institutes, San Francisco, San Francisco, CA, USA Department of Bionengineer and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA (1)
Regional Centre for Biotechnology, Faridabad, India (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Stanford University (1)
UK Dementia Research Institute at University of Edinburgh, University of Edinburgh, Edinburgh bioQuarter, Chancellor’s Building, 49 Little France Crescent, Edinburgh, EH16 4SB UK (1)
University of Edinburgh (1)

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G&T-seq: parallel sequencing of the genomes and transcriptomes of single cells

The ability to simultaneously sequence the genome and transcriptome of the same single cell offers a powerful means to dissect functional genetic heterogeneity at the cellular level. Here we describe G&T-seq, a method for separating and sequencing genomic DNA and full-length mRNA from single cells. ...

EGAS00001001204 | EGA

Transcription profiling of human CD3-positive T cells from SLE and controls reveals activation of mTOR controls the loss of TCRI? in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation

CD3-positive T cells were negatively isolated from 10 SLE patients and 9 healthy controls without SLE. All of the SLE samples and control samples were compared with one another to identify baseline differences in expression due to the disease. Next, T cell preparations from 4 of the control subjec...

ORGANISM(S): Homo sapiens

2009-02-28 | E-GEOD-13887 | biostudies-arrayexpress

Expression data from T-bet deficient megakaryoerythroid progenitor (MEP) cells

RNA was harvested from T-bet deficient MEP cells versus "wild type" C57BL/6 control MEP cells freshly harvested from bone marrow. 3 samples in each group, representing MEP cells from three different T-bet deficient or control mice.

ORGANISM(S): Mus musculus

2015-11-01 | E-GEOD-68943 | biostudies-arrayexpress

Increased capture of post-endoscopic retrograde cholangiopancreatography adverse events by delayed (day 7) follow-up calls: a prospective comparison of physician- and nurse-initiated calls.

Not available

S-EPMC12277518 | biostudies-literature

Ectopic Expression of Self-Antigen Drives Regulatory T Cell Development and Not Deletion of Autoimmune T Cells.

Not available

S-EPMC5605461 | biostudies-literature

IL-17A is an essential cytokine to sustain pathogenic cell activation and inflammatory gene circuits in psoriasis vulgaris

In psoriasis, inflammation and epidermal hyperplasia are thought to be controlled by T cell-derived cytokines. Evidence now suggests that Th17 and Th22 cells infiltrate psoriasis lesions and by secreting IL-17 and IL-22, respectively, may drive disease-specific gene or cell responses. While studies ...

ORGANISM(S): Homo sapiens

2012-01-31 | E-GEOD-31652 | biostudies-arrayexpress

Innovation in BCMA CAR-T therapy: Building beyond the Model T.

Not available

S-EPMC9729952 | biostudies-literature

Dubey2008 - Modeling the interaction between avascular cancerous cells and acquired immune response

MODELING THE INTERACTION BETWEEN AVASCULAR CANCEROUS CELLS AND ACQUIRED IMMUNE RESPONSE B. DUBEY, UMA S. DUBEY and SANDIP BANERJEE Abstract This paper deals with the interaction between dispersed cancer cells and the major populations of the immune system, namely, the T helper cells, T Cytotoxic ...

2024-09-02 | BIOMD0000000886 | BioModels

Immuno-oncology