Banks J J - OmicsDI

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Unknown (1155)
Proteomics (34)
Transcriptomics (30)
Genomics (26)
Metabolomics (9)
Multiomics (1)

Organisms

Homo sapiens (47)
Mus musculus (10)
Triticum aestivum (5)
Rattus norvegicus (3)
Sus scrofa (2)
Enterococcus faecalis (2)
Picea glauca (1)
Mus sp. (1)
Escherichia coli (1)
Staphylococcus aureus (1)
Varroa destructor (1)

Repository

biostudies-arrayexpress (30)
EGA (25)
MassIVE (16)
pride (16)
MetaboLights (9)
iProX (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (4)
T cell (3)
Blood cell (2)
Bile (1)
Blood (1)
Blood platelet (1)
Brain (1)
Brown adipose tissue (1)
Dopaminergic neuron (1)
Epithelial cell (1)
Erythrocyte (1)
Kidney (1)
Lymph node (1)
Substantia nigra (1)

Disease

Adenocarcinoma (1)
Cholangiocarcinoma (1)
Disease free (1)
Renal clear cell carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (16)
Shotgun proteomics (10)
Mass spectrometry (6)
NMR spectroscopy (3)
All-ion fragmentation (2)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

LTQ (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion Lumos (3)
Illumina NovaSeq 6000 (2)
LTQ Orbitrap Elite (2)
Q Exactive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Nuclear Magnetic Resonance (NMR) - (2)
HiSeq 2000 (1)
NextSeq 2000 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Orbitrap Ascend (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Velos elite (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
Exactive (Thermo Scientific) (1)
LECO Pegasus III, GCTOFMS (1)
LTQ-FT (1)
Nuclear Magnetic Resonance (NMR) (1)
UHPLC-DAD-HR-MS/MS (1)
QSTAR XL (1)

Publication Date

2008 (8)
2021 (8)
2024 (7)
2019 (6)
2025 (5)
2018 (5)
2016 (5)
2022 (5)
2014 (4)
2012 (4)
2010 (4)
2023 (4)
2020 (3)
2026 (2)
2011 (1)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15891 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:10642 (2)
CHEBI:15354 (2)
CHEBI:16199 (2)
CHEBI:16449 (2)
CHEBI:17234 (2)
CHEBI:17268 (2)
CHEBI:17368 (2)
CHEBI:17497 (2)
CHEBI:17750 (2)
CHEBI:17754 (2)
CHEBI:17992 (2)
CHEBI:18012 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:20067 (2)
CHEBI:22660 (2)
CHEBI:25094 (2)
CHEBI:28300 (2)
CHEBI:30769 (2)
CHEBI:32805 (2)
CHEBI:32816 (2)
CHEBI:43355 (2)
CHEBI:78320 (2)
CHEBI:1148 (1)
CHEBI:132833 (1)
CHEBI:132950 (1)

Metabolite Name

Choline (3)
Creatine (3)
Creatinine (3)
Glycine (3)
Alanine (2)
Glucose (2)
Taurine (2)
Tyrosine (2)
Urea (2)
Xanthine (2)
(+)-alpha-tocopherol (1)
(R)-pantothenic acid (1)
(S)-lactic acid (1)
(Z)-icos-11-enoic acid (1)
(epi)afzelechin_(epi)catechin (1)
1,5-anhydro-D-glucitol (1)
1-Methylhistidine (1)
1-Methylnicotinamide (1)
2-Hydroxyisobutyrate (1)
2-aminoadipic acid (1)
2-oxoglutaric acid (1)
3-Hydroxybutyric acid (1)
3-Hydroxyisovalerate (1)
3-Hydroxyisovaleric acid (1)
3-Indoxylsulfate (1)
3-Methylhistidine (1)
3-hydroxybutyric acid (1)
3-phospho-D-glyceric acid (1)
4-methyl-2-oxopentanoic acid (1)
5-Aminolevulinic acid (1)

First Public Date

2023 (1)

Modification

0.984016 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (20)
RNA-seq of coding RNA (5)
RNA-seq of total RNA (2)
Animal - One-color microarray (1)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (138)
2024 (131)
2020 (120)
2025 (115)
2021 (112)
2023 (110)
2019 (84)
2018 (62)
2017 (50)
2015 (47)
2016 (38)
2014 (31)
2012 (27)
2011 (27)
2010 (18)
2013 (17)
2026 (14)
2008 (14)
2009 (9)
2007 (6)
2003 (4)
2006 (3)
2005 (3)
2004 (2)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Cambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, CB2 0XY, UK (2)
1Institute of Plant Protection, Agricultural Research Organization, The Volcani Center, Rishon LeZion, Israel (1)
Bruce M. Spiegelman, Ph D. Stanley J. Korsmeyer Professor of Cell Biology and Medicine Dana-Farber Cancer Institute, Harvard Medical School bruce_spiegelman@dfci.harvard.edu 617-632-3567 (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Chemistry, Chair of Organic Chemistry II, Center For Functional Protein Assemblies (CPA), Technische Universität München, Lichtenbergstraße 4, 85748 Garching, Germany (1)
FIDIS (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
Joao A. Paulo Cell Biology Harvard Medical School Boston, MA 02115 (1)
Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, 44801 Bochum, Germany (1)
Molecular Oncology Lab, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain (1)
Proteomics Core Facility University of Gothenburg (1)
School of Biochemistry, University of Bristol (1)
School of Life Sciences, University of Dundee, Dundee, UK(lab head) (1)
University of Bristol, School of Biochemistry (1)
University of Leeds (1)

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