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TranscriptomicsExploring the larval transcriptome of the common sole (Solea solea L.)
A microarray platform for Solea solea was developed to study gene expression profiles of common sole developmental stages. Characterization of the transcriptome of S. solea, focusing on larval and juvenile stages. After transcriptome sequencing and annotation [TSA accession number GAAQ00000000], an ...
ORGANISM(S): Solea solea 
2013-09-20 | E-GEOD-41261 | biostudies-arrayexpress
TranscriptomicsExpression profiles in two early developmental stages of Sparus aurata
Two different early developmental stages of gilthead sea bream: i) larvae at 24 hours post-hatching ( Stage 1), and ii) larvae at 96 hours post-hatching (Stage 4), were used for gene expression analysis. For each stage, total RNA was extracted from five (5) independent biological replicates, each c...
ORGANISM(S): Sparus aurata 
2009-02-19 | E-GEOD-12116 | biostudies-arrayexpress
TranscriptomicsTechnical replicates to determine array-to-array reproducibility.
Technical replicates, consisting of four independent hybridizations of the same labelled cRNA, were performed to determine array-to-array reproducibility. After normalization, correlation index between all replicates exceeded 98%. In this study, we analyzed reproducibility of Agilent-016251 Sparus...
ORGANISM(S): Sparus aurata 
2009-02-19 | E-GEOD-12118 | biostudies-arrayexpress
TranscriptomicsOverexpression of four and a half LIM domains protein 2 promotes epithelial-mesenchymal transition-like phenotype in fish pre-osteoblasts
Four and a half LIM domains protein 2 (FHL2) is a co-regulator of gene transcription relevant for many signalling pathways and physiological processes. In this work, the role of FHL2 in cell differentiation has been investigated during in vitro mineralization using a Sparus aurata pre-osteoblast cel...
ORGANISM(S): Sparus aurata 
2013-01-03 | E-GEOD-32501 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile of Ruditapes philippinarum gills and digestive glands.
A manila clam oligo microarray platform (GPL10900) was used to profile gene expression in gills and digestive gland of R. philippinarum. For each tissue, total RNA was extracted from three (3) independent biological replicates of digestive gland and gills, each consisting of tissue pools of five (5)...
ORGANISM(S): Ruditapes philippinarum 
2012-09-04 | E-GEOD-24101 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile of Ruditapes philippinarum sampled in Marghera and Alberoni
Digestive Gland Samples: A manila clam oligo microarray platform (GPL10900) was used to profile gene expression in digestive gland of R. philippinarum. Total RNA was extracted from three (3) independent biological replicates of digestive gland for each sampling site, each consisting of tissue pools ...
ORGANISM(S): Ruditapes philippinarum 
2012-08-25 | E-GEOD-27194 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile of muscle samples from growth promoters-treated and control cows.
A bovine oligo microarray platform (GPL7053) was used to evidence differences in gene expression profiles from twenty-four (24) muscle samples from growth promoters-treated cows and thirteen (13) from control animals. Two-factor ANOVA was performed using age and treatment as independent categorical ...
ORGANISM(S): Bos taurus 
2014-08-28 | E-GEOD-47827 | biostudies-arrayexpress
TranscriptomicsAnalysis of gene expression profiles on 38 days-old sea bass heads
A sea bass oligo microarray platform was used to profile gene expression in whole heads of 38 days-old sea bass affected by prognathism, a skeletal malformation that strongly affects sea bass production. Two different conditions: i) prognathous individuals, and ii) normal individuals were analyzed. ...
ORGANISM(S): Dicentrarchus labrax 
2010-10-22 | E-GEOD-19041 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile of bovine muscle samples
A bovine oligo microarray platform (GPL7053) was used to profile gene expression from twenty-five (25) bovine biceps brachii samples randomly collected at the slaughterhouse. Four (4) of these animals were suspected for corticosteroids treatment at tymus histological analyses. Eighteen (18) negative...
ORGANISM(S): Bos taurus 
2012-12-20 | E-GEOD-26318 | biostudies-arrayexpress
TranscriptomicsComparison of gene expression profile between 58 days-old prognatous sea bass jaws and control ones
A sea bass oligo microarray platform was used to profile gene expression in mandibles of 58 days-old sea bass affected by prognathism, a skeletal malformation that strongly affects sea bass production. Two different conditions: i) protruding jaws, and ii) normal jaws were used for gene expression an...
ORGANISM(S): Dicentrarchus labrax 
2010-10-22 | E-GEOD-19001 | biostudies-arrayexpress
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