Barr P P - OmicsDI

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Transcriptomics (3126)
Unknown (2601)
Genomics (94)
Proteomics (54)
Metabolomics (17)
Genomic (8)
Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (1477)
Mus musculus (847)
Rattus norvegicus (107)
Arabidopsis thaliana (68)
Drosophila melanogaster (50)
Saccharomyces cerevisiae (41)
Bos taurus (32)
Danio rerio (30)
Sus scrofa (29)
Gallus gallus (29)
Oryza sativa (21)
Zea mays (17)
Streptococcus pneumoniae D39 (16)
Caenorhabditis elegans (15)
Escherichia coli (12)
Macaca mulatta (11)
Canis lupus familiaris (11)
Salmo salar (8)
Oncorhynchus mykiss (7)
Ovis aries (7)
Oryza sativa Japonica Group (7)
Medicago truncatula (6)
Schizosaccharomyces pombe (6)
Glycine max (6)
Colinus virginianus (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Equus caballus (4)
Listeria monocytogenes (4)
Staphylococcus aureus (4)
Fagus sylvatica (4)

Organisms

Homo sapiens (15)

Repository

biostudies-arrayexpress (3198)
pride (28)
ENA (21)
MetaboLights (17)
EGA (11)
dbGaP (8)
geo (8)
MassIVE (5)
jPOST (2)
PAXDB (2)

Tissue

B cell (7)
Cell culture (4)
Epithelial cell (2)
A-549 cell (1)
Acute myeloid leukemia cell line (1)
B-lymphoblastoid cell line (1)
Bile (1)
Burkitt lymphoma cell (1)
Burkitt lymphoma cell line (1)
Cerebrospinal fluid (1)
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Colon (1)
Diffuse large B-cell lymphoma cell line (1)
Ear hair cell (1)
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Inner ear (1)
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Lymphocyte of B lineage (1)
Nasopharyngeal epithelial cell (1)
Ovarian serous carcinoma cell (1)
Pancreatic duct (1)
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Spleen (1)
Stomach (1)
T cell (1)

Disease

Normal (4)
Breast cancer (2)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
HPV positive (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Primary effusion lymphoma (PEL) (1)
Acute lymphocytic leukemia (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
Diseased (1)
Rett syndrome (1)
Schizophrenia (1)
Infected (1)
Primary tumor (1)
Renal cell carcinoma (1)
Prostate carcinoma (1)
Nodal peripheral T-cell Lymphoma (1)
Acute leukemia (1)
Adenocarcinoma (1)
Burkitt lymphoma (1)
Carcinoma (1)
Cystic echinococcosis (1)
Gastric adenocarcinoma (1)
Influenza (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Multiple sclerosis (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (13)
Mass spectrometry (11)
Bottom-up proteomics (11)
Mass spectrometry assay (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Immunopeptidomics (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (6)
NextSeq 500 (6)
NextSeq 550 (4)
Illumina HiSeq 2000 (4)
Sony SH800 (2)
Illumina NovaSeq X (2)
LTQ (2)
Orbitrap Fusion Lumos (2)
Eppendorf EpMotion 5073m pipetting robot (1)
PromethION (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
Agilent Surescan High Resolution DNA microarray Scanner (1)
10X Genomics Chromium (1)
Solexa 2G Genome Analyzer (1)
454 GS 20 (1)
Agilent 2100 Bioanalyzer (1)
GenePix 4000B [Axon Instruments] (1)
Illumina MiniSeq (1)
- (1)
TruSeq (Illumina, Novogene, Genomic Centre Cambridge, CB4 0FW, UK.) (1)
NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer (1)
Histopaque-1077,FACSAria Fusion Sorter,Flow Cytometer (1)
NextSeq 2000 (1)
MinION (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
LTQ XL ETD (1)

Publication Date

2010 (561)
2015 (530)
2013 (453)
2011 (379)
2012 (364)
2014 (354)
2016 (143)
2008 (128)
2009 (125)
2007 (51)
2022 (26)
2006 (22)
2025 (18)
2021 (17)
2026 (14)
2005 (14)
2019 (12)
2023 (9)
2018 (9)
2004 (9)
2020 (6)
2003 (6)
2024 (5)
2017 (4)
2002 (1)

UNIPROT ID/AC

10090.ENSMUSP00000072775 (2)
10090.ENSMUSP00000079944 (2)
10090.ENSMUSP00000105709 (2)
10090.ENSMUSP00000117461 (2)
10090.ENSMUSP00000127198 (2)
10090.ENSMUSP00000132065 (2)
10090.ENSMUSP00000132102 (2)
10090.ENSMUSP00000136357 (2)
10090.ENSMUSP00000136375 (2)
10090.ENSMUSP00000136544 (2)
10090.ENSMUSP00000137171 (2)
10090.ENSMUSP00000137236 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
3BHS1_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A0A087WQ89_MOUSE (2)
A0A140T8T4_MOUSE (2)
A0A1W2P6N8_MOUSE (2)
AACS_MOUSE (2)
AAK1_MOUSE (2)
AATC_MOUSE (2)
ABCA5_MOUSE (2)
ABHEB_MOUSE (2)
ACAD9_MOUSE (2)

CHEBI ID

CHEBI:18237 (4)
CHEBI:30769 (4)
CHEBI:32816 (4)
CHEBI:15354 (3)
CHEBI:15366 (3)
CHEBI:15422 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:15996 (3)
CHEBI:16010 (3)
CHEBI:16027 (3)
CHEBI:16135 (3)
CHEBI:16449 (3)
CHEBI:16708 (3)
CHEBI:16737 (3)
CHEBI:16761 (3)
CHEBI:16811 (3)
CHEBI:16856 (3)
CHEBI:16919 (3)
CHEBI:17126 (3)
CHEBI:17154 (3)
CHEBI:17202 (3)
CHEBI:17268 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17712 (3)
CHEBI:17750 (3)
CHEBI:17822 (3)

Metabolite Name

GTP (5)
ADP (4)
AMP (4)
ATP (4)
Isoleucine (4)
Taurine (4)
UDP-glucose (4)
Xanthine (4)
Acetate (3)
Adenine (3)
Alanine (3)
CTP (3)
Creatine (3)
Creatinine (3)
Ethanolamine (3)
Formate (3)
Glutamate (3)
Glutamine (3)
Hypoxanthine (3)
IMP (3)
Inosine (3)
Isobutyrate (3)
Leucine (3)
Lysine (3)
Methionine (3)
Phenylalanine (3)
Pyruvate (3)
Serine (3)
Threonine (3)
Tryptophan (3)

First Public Date

2014 (7)
2024 (3)
2023 (3)
2025 (2)
2019 (2)
2021 (1)
2020 (1)
2018 (1)
2017 (1)

Modification

10.008269 (1)
15.994915 (1)
42.010565 (1)
57.021464 (1)
8.014199 (1)

Study type

Transcription profiling by array (2458)
RNA-seq of coding RNA (236)
Unknown experiment type (117)
Comparative genomic hybridization by array (52)
ChIP-seq (52)
Other (47)
Methylation profiling by array (44)
RNA-seq of non coding RNA (38)
ChIP-chip by tiling array (33)
Transcription profiling by SAGE (20)
Proteomic profiling by array (16)
Transcription profiling by RT-PCR (14)
RNA-seq of coding RNA from single cells (13)
Transcription profiling by tiling array (12)
Genotyping by array (10)
Methylation profiling by high throughput sequencing (8)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
MicroRNA profiling by high throughput sequencing (3)
RNA-seq of total RNA (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)
Differential (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by mass spectrometer (1)
Bisulfite-seq (1)

Release Date

2015 (650)
2010 (601)
2013 (531)
2014 (447)
2011 (431)
2012 (417)
2022 (302)
2025 (266)
2023 (257)
2021 (255)
2016 (239)
2020 (221)
2024 (200)
2019 (187)
2018 (166)
2009 (153)
2008 (145)
2017 (133)
2007 (59)
2026 (45)
2006 (28)
2005 (21)
2003 (14)
2004 (13)
2002 (6)
2001 (5)
2000 (4)
1999 (3)

Lab affiliation

1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Cambridge Institute for Medical Research, Hills Road, Cambridge, CB2 0XY (1)
Cancer Research Institute, Xiangya Basic Medical College, Central South University, No. 110 Xiangya Road, Kaifu District, Changsha City, Hunan Province (1)
Cancer Research UK Cambridge Institute, Li Ka Shing Centre , University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Center for Alzheimer's and Related Dementias (CARD), National Institute on Aging and National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA. (1)
Centre for Gene Regulation and Expression University of Dundee (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Emil-Erlenmeyer-Forum 5, D-85354, Freising, Germany Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Gregor-Mendel-Strasse 4, D-85354, Freising, Germany (1)
Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel (1)
Department of Human Genetics, University of Chicago, Chicago, Illinois, USA; Department of Medicine, University of Chicago, Chicago, Illinois, USA (1)
Department of Medicine II, Hematology/Oncology, Theodor-Stern-Kai 7, D-60590 Frankfurt am Main, Germany (1)
Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University (1)
Head of Proteomics & Metabolomics Facility (1)
Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA (1)
Institute for Research in Immunology and Cancer, Department of Chemistry, Université de Montréal, Montréal, Québec, Canada H3T 1J4 (1)
Institute of Molecular and Cellular Biology (1)
Intercollegiate Faculty of Biotechnology, Laboratory of Mass Spectrometry, University of Gdańsk and Medical University of Gdańsk, Gdańsk, Poland (1)
Laboratório de Genômica Estrutural e Funcional, Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, UFRGS, Porto Alegre, Brazil (1)
Neuroimmunology and MS Research, Neurology Clinic, University Hospital Zurich, University of Zurich, 8091 Zurich, Switzerland (1)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR 97239 (1)
Paul J Lehner PhD FRCP FMed Sci FRS Sheila Joan Smith Professor of Immunology Wellcome Principal Fellow and Honorary Consultant University of Cambridge CITIID Cambridge Biomedical Campus Cambridge CB2 0AW (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (1)
Professor of Molecular Biology, University of Dundee (1)
The Rockefeller University (1)
University of Southern California (1)
Wohl Institute for Drug Discovery, High Throughput Screening unit, Grand Israel National Center for Personalized Medicine, the Weizmann Institute of Science, Rehovot, Israel (1)

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Ceramide Promotes Lytic Reactivation of Epstein-Barr Virus in Gastric Carcinoma

Epstein-Barr virus (EBV) has a lifelong latency period after initial infection. Rarely, however, when the EBV immediate early gene BZLF1 is expressed by a specific stimulus, the virus switches to the lytic cycle to produce progeny viruses. We found that EBV infection reduced levels of various cerami...

2023-12-20 | MTBLS7649 | MetaboLights

Characterization Epstein-Barr Virus-Associated Encephalitis via Identification of Metabolomic Biomarkers

Objective: Fulminant Epstein-Barr Virus (EBV) infection may lead to fatal outcomes in patients with EBV-associated encephalitis (EBVAE). To investigate potential biomarkers in EBVAE, we utilized an untargeted metabolomic methodology to identify disease-associated biomarkers in patients ...

2026-03-23 | MTBLS14111 | MetaboLights

Gene Expression Analysis of Human Endometrial Endothelial Cells Exposed to o,p'-DDT

The endocrine disrupting chemical o,p'-DDT can affect reproductive organs, tissues and cells in several species. Treatment of human endometrial endothelial cells (HEEC) with 50 µM o,p'-DDT decreased the cell proliferation compared to the control. Microarray analyses revealed that o,p'-DDT affected b...

ORGANISM(S): Homo sapiens

2007-10-10 | E-GEOD-9252 | biostudies-arrayexpress

EBER2 RNA-induced transcriptome changes identify cellular processes likely targeted during Epstein Barr Virus infection.

Little is known about the physiological role of the EBER1 and 2 nuclear RNAs during Epstein Barr viral infection. The cellular transcription response to EBER2 expression using the wild-type and an internal deletion mutant was determined. Significant changes in gene expression patterns were observed....

ORGANISM(S): Homo sapiens

2008-10-02 | E-GEOD-11093 | biostudies-arrayexpress

DEPS-1 promotes P granule assembly and RNA interference in C. elegans germ cells

P granules are germ-cell-specific cytoplasmic structures containing RNA and protein and required for proper germ cell development in C. elegans. A new P-granule-associated protein, DEPS-1, whose loss disrupts P granule structure and function was analysed in this study. Genome wide analysis of gene...

ORGANISM(S): Caenorhabditis elegans

2010-05-26 | E-GEOD-9993 | biostudies-arrayexpress

Identifying Sites Bound by Epstein Barr Nuclear Antigen 1 (EBNA1) in the Human Genome

Epstein-Barr virus (EBV) is a ubiquitous gammaherpes virus that establishes a life-long latency in over 90% of the world's population. Epstein Barr Nuclear Antigen 1, EBNA1, is the only viral protein consistently detected in all viral latency programs, as well as in all forms of EBV-associated malig...

ORGANISM(S): Homo sapiens

2010-05-14 | E-GEOD-13315 | biostudies-arrayexpress

A metabolic dependency of EBV can be targeted to hinder B cell transformation

Following infection of B cells, Epstein Barr virus (EBV) engages host pathways that mediate cell proliferation and transformation, contributing to the propensity of the virus to drive immune dysregulation and lymphomagenesis. We found that the EBV protein EBNA2 initiates NAD de novo bios...

2024-04-29 | MTBLS2243 | MetaboLights

DNA methylation epigenotype expanding to non-polycomb target genes, induced by Epstein-Barr virus infection in human gastric cancer

This SuperSeries is composed of the following subset Series: GSE31787: Aberrant DNA methylation epigenotype expanding to non-polycomb target genes, induced by Epstein-Barr virus infection in human gastric cancer [Affymetrix Expression] GSE31788: Aberrant DNA methylation epigenotype expanding to non-...

ORGANISM(S): Homo sapiens

2012-01-04 | E-GEOD-31789 | biostudies-arrayexpress

Genome-Wide Analysis of Host-Chromosome Binding Sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)

The Epstein-Barr Virus (EBV) Nuclear Antigen 1 (EBNA1) protein is required for the establishment of EBV latent infection in proliferating B-lymphocytes. EBNA1 is a multifunctional DNA-binding protein that stimulates DNA replication at the viral origin of plasmid replication (OriP), regulates transc...

ORGANISM(S): Homo sapiens

2011-07-16 | E-GEOD-30709 | biostudies-arrayexpress

Epstein Barr Virus Nuclear Antigen 3C binds to BATF/IRF4/SPI1 sites and represses CDKN2A by recruiting Sin3A

We report the application of ChIP Seq to study the Epstein Barr Virus Nuclear Antigen 3C, an essential transcriptional regulator involved in the transformation of Resting B Lymphocytes to the immortalized Lymphoblast Cell Lines Examination of viral and cellular transcription factors in 1 type of cel...

ORGANISM(S): Homo sapiens

2013-12-22 | E-GEOD-52632 | biostudies-arrayexpress

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