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TranscriptomicsATAC-seq of CP-A Barrett's oesophagus cells
The open chromatin of Barrett's oesophagus cell line CP-A has been profiled by ATAC-seq.
ORGANISM(S): Homo sapiens 
2020-09-30 | E-MTAB-8994 | biostudies-arrayexpress
TranscriptomicsATAC-seq of human Barrett's oesophagus tissue
Barrett's esophagus is the assumed precusor to oesophageal adenocarcinoma. We profiled the open chromatin of human Barrett's biopsies to gain insight into its molecular basis.
ORGANISM(S): Homo sapiens 
2019-02-04 | E-MTAB-6751 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli response to 0.2 mM Zn
E. coli response to 0.2 mM Zn
ORGANISM(S): Escherichia coli 
2005-03-01 | E-MEXP-222 | biostudies-arrayexpress
TranscriptomicsSingle-cell 5' Gene Expression and V(D)J Amplification (10X Genomics) of splenic CD4+ T cells from Plasmodium chabaudi infected mice
To associate gene expression profiles with specific features of the splenic CD4+ T-cell repertoire generated during a blood stage P. chabaudi infection, we obtained both transcriptomic and T-cell receptor data from 2 infected mice at 7 days following infection.
ORGANISM(S): Mus musculus 
2020-11-13 | E-MTAB-9691 | biostudies-arrayexpress
TranscriptomicsAerobic transcriptional responses of Escherichia coli to NO under defined chemostat conditions.
Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 8 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the ...
ORGANISM(S): Escherichia coli 
2010-07-01 | E-GEOD-5075 | biostudies-arrayexpress
TranscriptomicsAnaerobic transcriptional responses of Escherichia coli to NO under defined chemostat conditions.
Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 54 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the d...
ORGANISM(S): Escherichia coli 
2010-07-01 | E-GEOD-5076 | biostudies-arrayexpress
TranscriptomicsTranscriptional responses of Anaerobically grown Escherichia coli to GSNO under defined chemostat conditions.
Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 54 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the d...
ORGANISM(S): Escherichia coli 
2010-06-10 | E-GEOD-2129 | biostudies-arrayexpress
TranscriptomicsTranscriptional responses of Escherichia coli to GSNO under defined chemostat conditions.
Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 54 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the d...
ORGANISM(S): Escherichia coli 
2010-06-10 | E-GEOD-2095 | biostudies-arrayexpress
GenomicsRAG Represents a Widespread Threat to the Lymphocyte Genome - (Mnase-seq)
The RAG1 endonuclease, together with its cofactor RAG2, is essential for V(D)J recombination but is a potent threat to genome stability. The sources of RAG1 mistargeting and the mechanisms that have evolved to suppress it are poorly understood. Here, we report the surprising finding that RAG1 bind...
ORGANISM(S): Mus musculus 
2015-08-06 | E-GEOD-69474 | biostudies-arrayexpress
TranscriptomicsSOX15 governs a transcriptional program in human esophageal stratified epithelium and in a subset of esophageal adenocarcinomas
We identified spatially restricted transcription factors and found SOX15 expression confined to stratified esophageal epithelium, with attenuation in Barrett's esophagus. SOX15 binds esophagus-specific loci and its loss in human esophageal cells affected esophagus-specific transcripts [RNA-Seq] Tota...
ORGANISM(S): Homo sapiens 
2015-11-09 | E-GEOD-62909 | biostudies-arrayexpress
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