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TranscriptomicsTranscription profiling of rat ganglionic eminences and cerebral cortex at embryonic stages E12.5, E14 and E16
Gene expression profiling of the medial (MGE), lateral (LGE) and caudal (CGE) ganglionic eminence, and cerebral cortex (CTX) at various embryonic stages (E12.5, E14 and E16).
ORGANISM(S): Rattus norvegicus 
2008-04-19 | E-MEXP-570 | biostudies-arrayexpress
TranscriptomicsExpression data from primary and secondary CD4 T cell effectors responding towards influenza A virus infection
How secondary CD4 T cell effectors, derived from resting memory cells, differ from primary cells, derived from naïve precursors, and how such differences impact recall responses to pathogens is unknown. We used microarrays to detail the global programme of gene expression underlying differences betw...
ORGANISM(S): Mus musculus 
2012-08-27 | E-GEOD-40230 | biostudies-arrayexpress
TranscriptomicsExpression data from WT and IL-2 secondary CD4 T cell effectors responding towards infuenza A virus infection
How IL-2 produced by secondary CD4 T cell effectors, derived from resting memory cells, impacts memory CD4 T cell function and survival to memory following antigen re-encounter is unknown. We used microarrays to detail the global programme of gene expression underlying differences between WT and IL-...
ORGANISM(S): Mus musculus 
2015-05-14 | E-GEOD-60186 | biostudies-arrayexpress
TranscriptomicsGenomic comparisons of USA300 Staphylococcus aureus colonizating the nose and rectum of children with skin abscesses
USA300 Staphylococcus aureus is responsible for the current outbreak of skin abscesses in the United States. Unlike other USA types, USA300 colonizes the rectum at rates higher than the nose. The reason for the difference in colonization site preference may be related to specific adherence or attach...
ORGANISM(S): Staphylococcus aureu 
2011-04-15 | E-BUGS-102 | biostudies-arrayexpress
TranscriptomicsRegulation of the ESC transcriptome by nuclear long non-coding RNAs
We performed poly(A)+ RNA sequencing (Illumina GAIIx) from nuclear and whole cell RNA fractions of mouse AB2.2 embryonic stem cells (ESCs) and neural progenitors (NPCs) differentiated from ESCs. We further transfected AB2.2 ESCs with control antisense oligonucleotides (ASOs), or 2 independent ASOs e...
ORGANISM(S): Mus musculus 
2015-12-01 | E-MTAB-3198 | biostudies-arrayexpress
TranscriptomicsCancer-induced Muscle Wasting is IKKM-NM-2-dependent and NF-kappaB-independent
Existing data suggest that NF-kappaB signaling is a key regulator of cancer-induced skeletal muscle wasting. However, identification of the components of this signaling pathway and of the NF-M-NM-:B transcription factors that regulate wasting is far from complete. In muscles of C26 tumor bearing m...
ORGANISM(S): Mus musculus 
2013-11-15 | E-GEOD-48363 | biostudies-arrayexpress
TranscriptomicsStrome NA_N2_EEMB
modENCODE_submission_2364 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2010-07-07 | E-GEOD-22726 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 30 ovarian cancer cell lines reveals amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer
DNA from 30 cultured ovarian cancer cell lines was extracted with Promega kits and hybridize to arrays. Arrays comprised of 1860 BACs selected to include genes known to be involved in cancer pathogenesis and 400 BACs selected to tile across 13 Mbp at 3q26, 15 Mbp at 8q24, and 30 Mbp at 20q centered ...
ORGANISM(S): Homo sapiens 
2007-06-04 | E-TABM-246 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse sympathetic neurons cultured alone and in contact with their myocyte targets
We identified 112 known genes and 150 expressed sequence tags (ESTs) showing more than a 1.3 fold change in target-exposed neurons compared to neurons grown in the absence of target. Expression of 36 genes and 49 ESTs was upregulated, while expression of 76 genes and 101 ESTs was downregulated by t...
ORGANISM(S): Rattus norvegicus 
2008-06-16 | E-GEOD-8393 | biostudies-arrayexpress
Genomicsseq-SDQ3838_T26A5.5_N2_Eemb
modENCODE_submission_6329 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-08-28 | E-GEOD-50332 | biostudies-arrayexpress
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