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Unknown (2733)
Proteomics (43)
Transcriptomics (22)
Genomics (6)
Models (2)

Organisms

Andropogon gerardi (40)
Bacteria (40)
Canis lupus familiaris (40)
Cnidaria (40)
Cricetulus griseus (40)
Eukaryota (40)
Fasciola (40)
Hepatitis B virus (40)
Human betaherpesvirus 5 (40)
Madurella mycetomatis (40)
Mesocricetus auratus (40)
Miscanthus x giganteus (40)
Mus musculus (40)
Mycobacterium tuberculosis (40)
Orthoflavivirus (40)
Panicum virgatum (40)
Platyhelminthes (40)
Pseudomonas aeruginosa AES-1R (40)
Homo sapiens (12)
Mus sp. (2)
Mus musculus (2)
Lathyrus sativus (1)
Jatropha curcas (1)
Eucalyptus grandis (1)
Quercus suber (1)
Zea mays (1)
Mycobacterium tuberculosis (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)
cellular organisms (1)

Organisms

Drosophila melanogaster (1)
Bos taurus (1)
soil metagenome (1)

Repository

pride (40)
biostudies-arrayexpress (21)
ENA (5)
BioModels (2)
MassIVE (2)
EGA (1)
geo (1)
jPOST (1)

Tissue

Cell culture (4)
Heart (3)
Urine (3)
Anal canal (1)
Blood (1)
Blood cell (1)
Brain (1)
Cardiac muscle (1)
Cerebrospinal fluid (1)
Embryo (1)
Embryonic stem cell (1)
HeLa cell (1)
Kernel (1)
Kidney (1)
Prostate adenocarcinoma cell (1)
Saliva (1)
Seminal plasma (1)
Silique (1)
Skin mucus (1)
Sperm (1)
Spermatozoid (1)
Stem cell (1)
Stomach (1)
Whole body (1)

Disease

Cardiovascular system disease (3)
Prostate adenocarcinoma (2)
Prostate cancer (2)
Amyotrophic lateral sclerosis type 1 (1)
Anal canal squamous cell carcinoma (1)
COVID-19 (1)
Cervix carcinoma (1)
Heart disease (1)
Stomach cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (25)
Bottom-up proteomics (6)
Gel-based experiment (4)
SWATH MS (3)
Top-down proteomics (2)
All-ion fragmentation (1)
Data-dependent acquisition (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
NextSeq 500 (3)
DNBSEQ-G400 (1)
Q Exactive (1)
Q Exactive Plus (1)

Publication Date

2022 (12)
2025 (11)
2023 (11)
2024 (6)
2021 (6)
2026 (4)
2014 (4)
2019 (3)
2016 (3)
2010 (2)
2015 (1)
2013 (1)
2012 (1)
2009 (1)
2017 (1)

IsPrivate

False (2)

First Public Date

2026 (1)
2024 (1)
2023 (1)
2021 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (2)

Modification

Not available (1)

Study type

Transcription profiling by array (10)
RNA-seq of coding RNA (6)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (355)
2022 (343)
2025 (314)
2023 (306)
2020 (267)
2024 (254)
2019 (189)
2018 (186)
2016 (101)
2017 (101)
2015 (82)
2014 (65)
2013 (46)
2026 (45)
2012 (32)
2011 (20)
2010 (17)
2009 (11)
2008 (5)
2007 (3)
2001 (3)
2000 (3)
2006 (2)
2005 (2)
1999 (1)
1998 (1)

Lab affiliation

CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (4)
1. iBET, Instituto de Biologia Experimental e Tecnológica, Apartado 12, 2780-901 Oeiras, Portugal. 2. ITQB-NOVA, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. Da República, 2780-157 Oeiras, Portugal. (1)
Biology department, Washington University in Saint Louis, Saint Louis, MO, USA (1)
CRG/UPF Proteomics Unit (1)
CSIC (1)
Center for Neuroscience and Cell Biology of the University of Coimbra, Portugal (1)
Centro de Biología Molecular Severo Ochoa (CBMSO). CSIC-UAM. Nicolas Cabrera, 1. 28049, Madrid. Spain. (1)
Computational and Experimental Biology Group NOVA MEDICAL SCHOOL / FACULDADE DE CIÊNCIAS MÉDICAS UNIVERSIDADE NOVA DE LISBOA Rua Câmara Pestana, 6-6A | 1150-082 Lisboa Portugal (1)
Departamento de Parasitologia Instituto de Ciências Biomédicas, Universidade de São Paulo Av. Prof. Lineu Prestes, 1374, sala 39, Sao Paulo, Brazil (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil (1)
Department of Cell Biology and Histology, Faculty of Medicine, Campus Mare Nostrum,University of Murcia, 30100 Murcia, IMIB, Spain (1)
Department of Food Technology, Spanish National Research Council (CSIC), Marine Research Institute (IIM), 36208 Vigo, Spain (1)
Department of Medical Sciences iBiMED University of Aveiro (1)
Department of Medical Sciences, Institute of Biomedicine-iBiMED,Univerity of Aveiro, 3810-193 Aveiro,Portugal (1)
Division of Plant Science and Technology, College of Agriculture Food and Natural Resources and Interdisciplinary Plant Group, University of Missouri, Columbia, MO 65211, USA (1)
Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Aas, Norway (1)
Faculty of Medicine of the University of Porto Alameda Prof. Hernâni Monteiro, 4200-319 Porto, Portugal (1)
Functional Proteomic, ICR (1)
Head of Department Group Leader Department Crop Genetics John Innes Centre Norwich UK, NR4 7UH (1)
Head of Proteomics Unit (affiliation at the time of MS data acquisition) Spanish National Cancer Research Centre (CNIO) Address: Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN (1)
IIM-CSIC (1)
IIS Biobizkaia (1)
Institute of Biochemistry II, Goethe University Frankfurt,Medical Faculty, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany. (1)
Institute of Marine Research (IIM-CSIC), Vigo, Spain (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Laboratory for Retinal Cell Biology, Departhment of Ophtalmology, University Hospital Zurich, University Zurich, Wagistrasse 14, 8952 Schlieren, Zurich, Switzerland (1)
Laboratory of Food Hygiene and Control. Department of Analytical Chemistry, Nutrition and Food Science, School of Veterinary Sciences, University of Santiago de Compostela, Lugo, Spain. (1)
Marine Research Institute (IIM-CSIC) (1)
Molecular Oncology and Pathology Lab, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain (1)
Northeastern University (1)