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TranscriptomicsGenotype x environment interactions in Arabidopsis thaliana genetical genomics
To assess plasticity in genetic regulation of gene expression in Arabidopsis thaliana, genome wide gene expression variation was analyzed in a Ler/Cvi recombinant inbred line (RIL) population treated with low-light. The variation in expression could be explained for many genes by expression quantita...
ORGANISM(S): Arabidopsis thaliana 
2013-03-01 | E-MTAB-1357 | biostudies-arrayexpress
TranscriptomicsTime series of gene expression profiles describing the temporal response to prolonged heat stress in C. elegans.
This experiment broadens our understanding of the temporal dynamics underlying the transcriptional response to heat stress. Using C. elegans hermaphrodite N2 populations, we have created a high-resolution time series of gene expression profiles taken at different time points during prolonged heat st...
ORGANISM(S): Caenorhabditis elegans 
2017-05-17 | E-MTAB-5753 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of ethylene induced hyponastic growth in Arabidopsis thaliana
Ethylene induced hyponastic growth in Arabidopsis thaliana F.F. Millenaar L.A.C.J. Voesenek and A.J.M. Peeters Our aim is to identify genes involved in the ethylene induced hyponastic growth. Upon submergence some plant species like Rumex palustris changes its leaf angle (hyponastic growth) and sho...
ORGANISM(S): Arabidopsis thaliana 
2003-08-22 | E-NASC-2 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling by microarray of Caenorhabditis elegans MT2124 x CB4856 RILs used for eQTL mapping
We crossed the MT2124 strain carrying the let-60 (n1046) gain of function mutation with the wild-type strain CB4856. From this cross a panel of mutation introgression recombinant inbred lines (miRILs) was generated. Using this population, the influence of genetic variation on the the let-60 (gf) mut...
ORGANISM(S): Caenorhabditis elegans 
2017-07-21 | E-MTAB-5856 | biostudies-arrayexpress
TranscriptomicsTime series of gene expression profiles from C. elegans exposed to heat-stress and during subsequent recovery
This data set provides insight into the temporal dynamics of gene expression changes during heat-stress (at 35C) and during subsequent recovery (at 20C) in Caenorhabditis elegans. Age synchronized C. elegans CB4856 hermaphrodite populations were exposed to heat stress (35C) for 0h, 0.5h, 1h, 2h, 4h,...
ORGANISM(S): Caenorhabditis elegans 
2019-09-30 | E-MTAB-7007 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis Ler/Cvi recombinant inbred line popultion to assess natural variation in gene expression
To assess natural variation in gene expression in Arabidopsis thaliana, genome wide gene expression variation was analyzed in a Ler/Cvi recombinant inbred line (RIL) population.The variation in expression could be explained for many genes by expression quantitative trait loci (eQTLs). These eQTLs ar...
ORGANISM(S): Arabidopsis thaliana 
2008-01-24 | E-TABM-214 | biostudies-arrayexpress
TranscriptomicsMicroarray on an infection time-series of Orsay virus in three Caenorhabditis elegans genotypes
This experiment investigates the temporal dynamics in gene expression upon Orsay virus infection in the nematode Ceanorhabditis elegans. Three different strains were infected: JU1580, N2, and CB4856. Of these, JU1580 is highly susceptible, N2 moderately susceptible, and CB4856 the most resistant str...
ORGANISM(S): Caenorhabditis elegans 
2020-07-14 | E-MTAB-7573 | biostudies-arrayexpress
TranscriptomicsMicroarray on Caenorhabditis elegans N2 and CB4856 infected with Orsay virus
This experiment investigates the gene expression differences upon Orsay virus infection in the Caenorhabdits elegans strains N2 and CB4856. Assays measuring viral load found that the N2 strain displays higher viral loads upon infection than the CB4856 strain. The goal of the experiment was to identi...
ORGANISM(S): Caenorhabditis elegans 
2020-07-08 | E-MTAB-7574 | biostudies-arrayexpress
TranscriptomicsRNA-seq of 3 day old C. elegans RILs exposes for 240 minutes to 0 mM or 400 mM ethanol
In this experiment we evaluate the transcriptional responses of C. elegans to 0 mM and 400 mM ethanol after 240 minutes by mapping expression quantitative trait loci. We used 70 mpRILs and their parental lines (JU1511, JU1926, JU1931, and JU1941). Animals were 3 day old when exposure and tissue coll...
ORGANISM(S): Caenorhabditis elegans 
2026-06-30 | E-MTAB-15535 | biostudies-arrayexpress
TranscriptomicsNatural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways
Complex traits, including common disease-related traits, are affected by many different genes that function in multiple pathways and networks. The apoptosis, MAPK, Notch and Wnt signalling pathways play important roles in development and disease progression. At the moment we have a poor understandin...
ORGANISM(S): Caenorhabditis elegans 
2016-02-16 | E-GEOD-77905 | biostudies-arrayexpress
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