Becher B B - OmicsDI

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Unknown (331)
Proteomics (140)
Transcriptomics (16)
Genomics (6)
Other (2)
Metabolomics (1)

Organisms

Homo sapiens (34)
Mus musculus (17)
Bacillus subtilis subsp. subtilis str. 168 (15)
Staphylococcus aureus (7)
Haloferax volcanii (5)
unclassified Bacteria (5)
Escherichia coli (4)
Aggregatibacter actinomycetemcomitans (3)
Anaerobutyricum hallii DSM 3353 (3)
Bacillus subtilis subsp. subtilis (3)
Butyrivibrio fibrisolvens DSM 3071 (3)
Faecalibacterium prausnitzii (3)
Marvinbryantia formatexigens DSM 14469 (3)
Megasphaera elsdenii DSM 20460 (3)
Porphyromonas gingivalis W83 (3)
Roseburia intestinalis L1-82 (3)
Synechocystis sp. PCC 6803 (3)
Xylanibacter ruminicola (3)
Bacillus subtilis (2)
Bacillus pumilus (2)
Bathymodiolus azoricus (2)
Clostridioides difficile 630 (2)
Clostridioides sp. (2)
Ensifer meliloti (2)
Enterobacter cloacae (2)
Rattus norvegicus (2)
Streptococcus pneumoniae D39 (2)
Staphylococcus aureus subsp. aureus NCTC 8325 (1)
Arabidopsis thaliana (1)
cellular organisms (1)

Organisms

Mus musculus (3)

Repository

pride (138)
biostudies-arrayexpress (16)
EGA (3)
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GPMDB (2)
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Tissue

Cell culture (15)
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Brown adipose tissue (1)
Burkitt lymphoma cell (1)
HL-60 cell (1)
HeLa cell (1)
JURKAT E-6.1 cell (1)
K-562 cell (1)

Disease

Not Available (2)
Acute leukemia (2)
Influenza (2)
Allergic asthma (1)
Anemia (1)
Atopic dermatitis (1)
Bladder disease (1)
Bone cancer (1)
Cystic fibrosis (1)
Psoriasis (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (138)
Shotgun proteomics (101)
Bottom-up proteomics (25)
Gel-based experiment (14)
Data-dependent acquisition (10)
SRM/MRM (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Metaproteomics (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Instrument (2)
LTQ-Orbitrap (2)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2020 (19)
2023 (17)
2022 (17)
2018 (17)
2026 (13)
2021 (12)
2025 (12)
2016 (8)
2024 (7)
2015 (7)
2017 (7)
2019 (6)
2011 (5)
2012 (3)
2014 (3)
2010 (2)
2013 (1)
2009 (1)

UNIPROT ID/AC

3MGA_BACSU (1)
3MGH_BACSU (1)
4OT_BACSU (1)
53DR_BACSU (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGL_BACSU (1)
AADK_BACSU (1)
AAPA_BACSU (1)
AAT1_BACSU (1)
AAT3_BACSU (1)
ABH_BACSU (1)
ABRB_BACSU (1)
ACCA_BACSU (1)
ACCC1_BACSU (1)
ACCC2_BACSU (1)
ACCD_BACSU (1)
ACDA_BACSU (1)
ACDB_BACSU (1)
ACDC_BACSU (1)
ACKA_BACSU (1)
ACNA_BACSU (1)
ACOA_BACSU (1)
ACOB_BACSU (1)
ACOC_BACSU (1)
ACOR_BACSU (1)
ACPK_BACSU (1)
ACPS_BACSU (1)
ACP_BACSU (1)
ACSA_BACSU (1)

CHEBI ID

CHEBI:16410 (1)
CHEBI:16668 (1)

Metabolite Name

Hypotaurine (1)
Pyridoxamine (1)

First Public Date

2021 (2)
2017 (1)

Modification

15.994915 (2)
57.021464 (2)
-2.01565 (1)
0.984016 (1)
119.004099 (1)
144.102062 (1)
229.162932 (1)
28.0313 (1)
396.083866 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
42.010565 (1)
42.04695 (1)
4x(15)N labeled L-arginine (1)
765.099559 (1)
79.966331 (1)
Not available (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (2)
RNA-seq of coding RNA from single cells (2)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

2021 (53)
2023 (36)
2025 (36)
2022 (36)
2020 (29)
2024 (24)
2017 (23)
2019 (20)
2016 (14)
2018 (14)
2015 (12)
2014 (10)
2012 (9)
2013 (7)
2011 (7)
2026 (6)
2010 (4)
2009 (4)
2007 (2)
2006 (1)

Lab affiliation

University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (7)
Cellzome (6)
Cellzome, a GSK company (6)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (5)
Institute of microbiology, University of Greifswald (4)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (4)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (4)
Department of Microbial Proteomics, University of Greifswald, Greifswald, Germany (3)
Department of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Germany (3)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (3)
Institute for Microbiology, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (3)
Institute of Microbiology, Department of Microbial Proteomics, Center for Functional Genomics of Microbes, University of Greifswald, 17489 Greifswald, Germany (3)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Germany (3)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
Dr. Andreas Otto Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 4205920 fax: +49 3834 4205902 (2)
Institute for Microbiology (2)
Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 864073 fax: +49 3834 864202 (2)
University of Greifswald, Center for Functional Genomics of Microbes, Institute of Microbiology, Department of Microbial Proteomics, Felix Hausdorff Str. 8, 17489 Greifswald, Germany (2)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Microbial Proteomics Institute of Microbiology University of Greifswald Germany (1)
Department of Microbial Proteomics and Mass Spectrometry, Ernst-Moritz-Arndt-University Greifswald, Germany (1)
Department of Microbial Proteomics, Institute for Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Straße 8, 17489 Greifswald, Germany (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, D-17489 Greifswald, Germany (1)
Department of Microbial Proteomics, University of Greifswald, 17489 Greifswald, Germany (1)
Department of Microbial Proteomics, University of Greifswald, Centre of Functional Genomics of Microbes, Institute of Microbiology, Greifswald, Germany (1)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany (1)
Division of Chronic Inflammation and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany Institute for Interdisciplinary Research on Cancer Metabolism and Chronic Inflammation, The M3 Research Centre, Medical Faculty Tübingen, Germany (1)

Tags

xref:PubMed:28522693 (1)

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Twin study dissects CXCR3⁺ memory B cells as non-heritable feature in multiple sclerosis.

Not available

S-EPMC11018360 | biostudies-literature

B cell depletion attenuates CD27 signaling of T helper cells in multiple sclerosis.

Not available

S-EPMC10829729 | biostudies-literature

Antibodies Produced by CLL Phenotype B Cells in Patients With Myasthenia Gravis Are Not Directed Against Neuromuscular Endplates.

Not available

S-EPMC9909583 | biostudies-literature

Transcriptome analysis of Bacillus subtilis salt stress adaptation

Whole-genome microarray technology and state-of-the-art proteomic techniques were applied to provide a global and time-resolved picture of the physiological response of B. subtilis cells exposed to a severe and sudden osmotic up-shift. This combined experimental approach provided quantitative data f...

ORGANISM(S): Bacillus subtilis

2010-05-19 | E-GEOD-18345 | biostudies-arrayexpress

Plant Hsp90 proteins interact with B-cells and stimulate their proliferation.

Not available

S-EPMC3118808 | biostudies-literature

Differential virulence of Aggregatibacter actinomycetemcomitans serotypes explained by exoproteome heterogeneity

Aggregatibacter actinomycetemcomitans (Aa) is a Gram-negative bacterial pathogen associated with periodontitis and non-oral diseases like rheumatoid arthritis and Alzheimer´s disease. Aa isolates with the serotypes a, b and c are globally most prevalent. Importantly, isolates displaying these seroty...

ORGANISM(S): Aggregatibacter actinomycetemcomitans

2022-12-16 | PXD036160 | Pride

Cell physiology of the biotechnological relevant bacterium Bacillus pumilus-an omics-based approach.

Data from ProteomeXchange, PXD ID: PXD000780. Experiment: O2_U1_gmr_sh_11_1, file: 100223_O2_U1_gmr_sh_11_1_4.mzml. Published as part of J Biotechnol. 2014 Dec 20;192 Pt A:204-14 . From the Abstract: {{i}} Members of the species Bacillus pumilus get more and more in focus of the biotechnological in...

ORGANISM(S): Crap, Bacillus_pumilus_safr_032

GPM32310018327 | GPMDB

Resource Reanalysis

Characterization of outer membrane vesicles of Aggregatibacter actinomycetemcomitans serotypes a, b and c and their interactions with human neutrophils

Aggregatibacter actinomycetemcomitans (Aa) is a Gram-negative oral pathogen associated with periodontitis and systemic diseases. Seven serotypes of Aa are known, with serotypes a, b and c being most prevalent worldwide. Interestingly, isolates belonging to serotypes a, b and c present differences in...

ORGANISM(S): Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans) (Haemophilus actinomycetemcomitans)

2025-12-02 | PXD040447 | Pride

Aggregatibacter actinomycetemcomitans Omvs Outer membrane vesicles Neutrophils Proteome

Cathepsin B Processing Is Required for the In Vivo Efficacy of Albumin-Drug Conjugates.

Not available

S-EPMC10885003 | biostudies-literature

Proposed BoNT/A and /B Peptide Substrates Cannot Detect Multiple Subtypes in the Endopep-MS Assay.

Not available

S-EPMC6949424 | biostudies-literature

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