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MetabolomicsCreation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti
Many bacteria, often associated with eukaryotic hosts and of relevance for biotechnological applications, harbor a multipartite genome composed of more than one replicon. Biotechnologically relevant phenotypes are often encoded by genes residing on the secondary replicons. A synthetic biology approa...
2021-03-17 | MTBLS576 | MetaboLights
TranscriptomicsTranscription profiling time series of Sinorhizobium meliloti in response to an osmotic upshift elicited by salt or sucrose
Time course of the S. meliloti response to an osmotic upshift elicited by salt (300mM or 400mM) or sucrose (500mM or 700mM)
ORGANISM(S): Sinorhizobium meliloti 
2006-08-17 | E-MEXP-785 | biostudies-arrayexpress
GenomicsChIP-Seq of the Sinorhizobium meliloti CRP-like protein Clr in combination with either cAMP or cGMP under different growth conditions
In bacteria, Crp-Fnr superfamily transcription factors mediate 3',5'-cyclic adenosine monophosphate (cAMP) and 3',5'-cyclic guanosine monophosphate (cGMP) signaling. The CRP-like protein Clr of the soil-dwelling and plant-symbiotic α-proteobacterium Sinorhizobium meliloti was previously shown to act...
ORGANISM(S): Sinorhizobium meliloti 
2023-03-23 | E-MTAB-11788 | biostudies-arrayexpress
ProteomicsProteolytic processing of CD99
The adhesion molecule CD99 is essential for transendothelial migration (TEM) of leukocytes. Here we demonstrate by biochemical and cellular assays that CD99 undergoes ectodomain shedding by the metalloprotease meprin ? and subsequent intramembrane proteolysis by ?-secretase. The cleavage site in CD9...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-29 | MSV000080746 | MassIVE
TranscriptomicsTranscription profiling of Medicago roots from MtTi2i vs control after infection with Aphanomyces euteiches
Comparsion of root transcriptome profiles after Aphanomyces euteiches infections between control and MtTi2i-lines
ORGANISM(S): Medicago truncatula 
2006-03-03 | E-MEXP-572 | biostudies-arrayexpress
GenomicsSingle-nucleotide variant and marker frequency analysis of Sinorhizobium meliloti strains with rearranged genomic DNA
S. meliloti strains with a bi- and monopartite genome configuration were constructed by consecutive Cre/lox-mediated site-specific fusions of the secondary replicons. Beside the correct genomic arrangements, these strains and precursors were tested for variations in the nucleotide sequence. Futher, ...
ORGANISM(S): Sinorhizobium meliloti 
2024-09-30 | E-MTAB-11878 | biostudies-arrayexpress
TranscriptomicsTranscriptome of Sinorhizobium meliloti RNase mutants
The ribonucleases (RNases) E and J are essential in Escherichia coli and Bacillus subtilis, respectively. Sinorhizobium meliloti contains both, the rne gene encoding RNase E and the rnj gene encoding RNase J. The transcriptomes of the S. meliloti Rm2011 wild type, and rne and rnj mutants were compar...
ORGANISM(S): Sinorhizobium meliloti 
2017-01-21 | E-MTAB-5435 | biostudies-arrayexpress
no omics definedTranscription profiling of Medicago truncatula radicles incubated in polyethylene glycol solution and embryos at different time points after pollination to study dessication tolerance
Time course of the transcriptome of desiccation-sensitive 2.7-2.9 mm-long radicles of Medicago truncatula seeds at different time points during incubation in a polyethylene glycol (PEG) solution at -1.7 MPa and 10°C, resulting in a gradual re-establishment of desiccation tolerance. Gene profiling wa...
ORGANISM(S): Medicago truncatula 
2006-04-30 | E-MEXP-664 | biostudies-arrayexpress
Transcriptomicsmaize seed exudates - B. amyloliquefaciens FZB42
The effect of maize seed (Zea mays L. var. Surprise) exudates on Bacillus amyloliquefaciens FZB42 cultures grown to OD600 = 1.0 or 3.0 was tested against a negative seed exudate control sample.
ORGANISM(S): Bacillus amyloliquefaciens 
2013-03-09 | E-MEXP-3788 | biostudies-arrayexpress
TranscriptomicsBacillus amyloliquefaciens FZB42 maize root exudate treatment
The transcriptomic response of Bacillus amyloliquefaciens FZB42 to maize root exudates at OD600=3.0. This is a comprehensive analysis using the data of six microarray experiments (Exp1-2-3 and ExpABC respectively, 18 hybridization in total).
ORGANISM(S): Bacillus amyloliquefaciens 
2011-11-01 | E-MEXP-3421 | biostudies-arrayexpress
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