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ProteomicsiBench Ground Truth Validation Tool 2.0
iBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. In this updated version, iBench 2.0 takes high confidence peptide identifications from previously measured MS data and embeds the sequences in an in silico-only proteome as spliced or non-spl...
ORGANISM(S): Homo sapiens (Human) 
2023-12-21 | PXD044451 | Pride
Mass spectrometry 20s proteasomes Benchmarking Mhc-i presentation Pcps 
ProteomicsThe Immunopeptidomic Landscape of Ependymomas provide actionable antigens for T cell-based immunotherapy
Ependymoma (EPN) are primary tumors of the nervous system. Due to their growth pattern, most ependymoma can be managed with neurosurgical resection alone. A substantial proportion of these tumors recurs or display infiltrative growth pattern, however. Therapeutic options after neurosurgical resectio...
ORGANISM(S): Homo sapiens (Human) 
2025-05-26 | PXD052448 | Pride
Peptide vaccine Hla ligands Mass spectrometry Cancer vaccination Neuroepithelial tumor Immunotherapy 
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