Bergmann M M - OmicsDI

Show results for

Unknown (1317)
Proteomics (37)
Transcriptomics (31)
Genomics (30)
Metabolomics (4)
Multiomics (1)

Organisms

Homo sapiens (42)
Schizophyllum commune H4-8 (29)
Mycobacterium tuberculosis SP7 (29)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (29)
Oryza sativa Japonica Group (29)
Rabbit calicivirus (29)
Crotalus durissus terrificus (29)
Eriocheir sinensis (29)
Candidatus Endoriftia persephonae (29)
Mycobacterium tuberculosis SP10 (29)
Mycobacterium tuberculosis SP13 (29)
Cotesia typhae (29)
Mycobacterium tuberculosis SP22 (29)
Cepaea nemoralis (29)
Enterobacter ludwigii (29)
Trichoderma asperellum CBS 433.97 (29)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (29)
Nakaseomyces glabratus (29)
Olea europaea (29)
Mumps virus strain Enders (29)
Mus musculus (8)
Arabidopsis thaliana (5)
Callithrix jacchus (1)
Macaca mulatta (1)
Monodelphis domestica (1)
Streptococcus dysgalactiae subsp. dysgalactiae (1)
Gallus gallus (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (34)
pride (29)
EGA (27)
MetaboLights (4)
MassIVE (3)
PAXDB (3)
jPOST (2)

Tissue

Cell culture (4)
Shoot (3)
Root (3)
Nephrocyte (2)
Brain (2)
Fibroblast (2)
Epithelial cell (2)
Colon (2)
Prostate cancer cell (1)
Rectal cancer cell (1)
Colorectal cancer cell (1)
Dentin (1)
Cell (1)
Extracellular vesicle (1)
Cerebrospinal fluid (1)
Plant cell (1)
Cell suspension culture (1)
Cell line cell (1)
Blood plasma (1)
Testis (1)
Whole body (1)
Primary cell (1)
Lung (1)
Permanent cell line cell (1)

Disease

Testicular seminoma (1)
Critical COVID-19 (1)
Colorectal carcinoma (1)
Rectum cancer (1)
Plasmodium falciparum malaria (1)
Prostate adenocarcinoma (1)
Alzheimer's disease (1)
Bacterial sepsis (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (17)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
SWATH MS (2)
Gel-based experiment (2)
Data-dependent acquisition (2)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Unknown (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 4000 (2)
Gas Chromatography MS - (2)
FACSAria Fusion (1)
Linux Beowulf cluster (1)
Linux computer (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ FT (1)
Q Exactive (1)
LTQ Orbitrap (1)
LTQ Orbitrap Discovery (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Exactive (Thermo Scientific) (1)

Publication Date

2019 (9)
2022 (8)
2011 (7)
2018 (6)
2016 (5)
2014 (5)
2025 (4)
2021 (4)
2020 (4)
2015 (4)
2024 (3)
2010 (3)
2023 (3)
2026 (2)
2013 (1)
2012 (1)
2009 (1)
2008 (1)
2007 (1)
2006 (1)
2005 (1)
2017 (1)

UNIPROT ID/AC

RIPR1_RAT (3)
RAP2B_RAT (3)
NINJ1_RAT (3)
P5CR2_RAT (3)
D4ABM5_RAT (3)
EPS8_RAT (3)
HNRH1_RAT (3)
RS9_RAT (3)
PTSS2_RAT (3)
MARCS_RAT (3)
B5DFB0_RAT (3)
ARL5A_RAT (3)
VATL_RAT (3)
D3ZJR6_RAT (3)
D3ZPN5_RAT (3)
RM14_RAT (3)
CBPD_RAT (3)
COR1A_RAT (3)
AKTIP_RAT (3)
TM254_RAT (3)
RL29_RAT (3)
D3Z917_RAT (3)
GBA2_RAT (3)
RISC_RAT (3)
UBX2B_RAT (3)
M0R402_RAT (3)
D3ZZ81_RAT (3)
B1WC34_RAT (3)
D3ZE49_RAT (3)
RBM42_RAT (3)

CHEBI ID

CHEBI:28300 (2)
CHEBI:139311 (1)
CHEBI:37708 (1)
CHEBI:141586 (1)
CHEBI:33954 (1)
CHEBI:8087 (1)
CHEBI:33984 (1)
CHEBI:24848 (1)
CHEBI:6824 (1)
CHEBI:17797 (1)
CHEBI:41253 (1)
CHEBI:24548 (1)
CHEBI:18183 (1)
CHEBI:33942 (1)
CHEBI:30805 (1)
CHEBI:18319 (1)
CHEBI:88000 (1)
CHEBI:90168 (1)
CHEBI:77064 (1)
CHEBI:77065 (1)
CHEBI:16217 (1)
CHEBI:17992 (1)
CHEBI:28866 (1)
CHEBI:16199 (1)
CHEBI:37684 (1)
CHEBI:22652 (1)
CHEBI:29864 (1)
CHEBI:16227 (1)
CHEBI:16610 (1)
CHEBI:15963 (1)

Metabolite Name

Altrose (1)
5,6-dihydroxyprostaglandin F1a (1)
20beta-dihydrocortisol (1)
6alpha-Prostaglandin I1 (1)
Hexadecenoic acid (1)
D-Glucono-1,5-lactone (1)
Pyridine (1)
Tagatose (1)
Fucose (1)
Butyric acid (1)
Tetracosanoic acid (1)
Ribitol (1)
SAICA riboside (1)
Aspartyl-glycyl-glutamate (1)
Beta-citryl-glutamyl-glutamate (1)
N-acetyl-aspartyl-glutamyl-glutamate (1)
Beta-Citrylglutamic acid (1)
N-acetylaspartyl glutamate (1)
Threonic acid (1)
Valine (1)
Pyruvic acid (1)
Leucine (1)
Phenylacetylglutamine (1)
Mannitol (1)
Nicotinic acid (1)
Ribose-5-phosphate (1)
Putrescine (1)
Urea (1)
Succinic acid (1)
Aconitic acid (1)

Study type

RNA-seq of coding RNA (12)
Transcription profiling by array (10)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (2)
Baseline (1)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2022 (153)
2025 (136)
2021 (133)
2020 (129)
2024 (111)
2023 (108)
2019 (86)
2018 (73)
2017 (71)
2016 (55)
2015 (55)
2014 (46)
2013 (35)
2011 (34)
2012 (30)
2010 (23)
2026 (19)
2009 (17)
2008 (11)
2006 (8)
2007 (7)
2005 (3)
2003 (2)
2004 (1)
2002 (1)
2001 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Klinik II für Innere Medizin: Nephrologie, Rheumatologie, Diabetologie und Allgemeine Innere Medizin Zentrum für Molekulare Medizin Köln (ZMMK) Uniklinik Köln Kerpener Str. 62 D-50937 Köln (3)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
Carnegie Institution at Stanford (2)
University Hospital Cologne (2)
Department of Drug Design and Pharmacology. University of Copenhagen. Denmark (1)
Department of Pathology, Medical University of Vienna, Austria (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Carnegie Mass Spectometry facility Carnegie Science at Stanford (1)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (1)
Medizinisches Proteom-Center, Ruhr University Bochum Clinic for Anesthesiology, Intensive Care and Pain Therapy, Knappschaft Clinics University Hospital Bochum (1)
Institute for Neuropathology, University Medical Center Hamburg-Eppendorf, Martinistraße 52, 20246, Hamburg, Germany (1)
University of Cologne, Center for Biochemistry, Cologne, germany (1)
Institute for Research in Biomedicine (IRB) Via Vela 6 CH-6500 Bellinzona Switzerland (1)
Parasitology Section Bernhard Nocht Institute for Tropical Medicine Bernhard-Nocht-Str. 74 20359 Hamburg Germany (1)
Institute for Physiological Chemistry Medizinisch-Theoretisches Zentrum MTZ Technical University Dresden Fiedlerstraße 42 D-01307 Dresden (1)
Istituto superiore di sanità (1)
Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology (1)
Institute for research in biomedicine (1)
The Rockefeller University (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge Biomedical Campus CB2 0QH Cambridge (1)
Department of Infectious Diseases and Immunology, Emerging Pathogens Institute, University of Florida, United States of America (1)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (1)
Carnegie Mass Spectrometry Facility at Stanford (1)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (1)