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TranscriptomicsTranscriptomic profiling of Salmonella during lag, exponential and stationary phases of growth
Transcriptional profiles during all phases of growth of Salmonella Typhimurium SL1344 were obtained and used to investigate growth phase-dependent alterations in gene expression. Viable count growth curve analysis of the growth system showed a culture lag time of 2.09 hours, and profiles at 4, 20, 4...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 
2011-12-13 | E-GEOD-22294 | biostudies-arrayexpress
TranscriptomicsExpression analysis in multiple muscle groups and serum reveals complexity in the microRNA transcriptome of the mdx mouse and implications for therapy
MicroRNAs (miRNAs) are a class of small RNAs that regulate gene expression and are implicated in wide-ranging cellular processes and pathological conditions including Duchenne muscular dystrophy (DMD). We have compared differential miRNA expression in proximal and distal limb muscles, diaphragm, hea...
ORGANISM(S): Mus musculus 
2012-06-11 | E-GEOD-36257 | biostudies-arrayexpress
Genomicsena-DATASET-DKFZ-IBIOS-24-09-2015-14:57:59:343-450 - samples
release_2: ICGC PedBrain: whole exome sequencing and Target-Seq
EGAD00001001624 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-24-09-2015-12:58:34:639-433 - samples
release_2: ICGC PedBrain: RNA sequencing
EGAD00001001620 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-25-01-2016-08:42:37:641-84 - samples
Whole genome bisulfite sequencing of pedbrain - medulloblastoma
EGAD00001001891 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-03-12-2015-09:19:32:271-3 - samples
4C-seq data was generated for regions of interest to confirm enhancer-gene promoter interactions
EGAD00001001847 | EGA
GenomicsRNA-seq_DATA_SET_ICGC_PedBrainTumor_Medulloblastoma_Discovery_Cohort - samples
ICGC PedBrain: RNA sequencing
EGAD00001000328 | EGA
Genomics2013-11-19-17-24-36-breez-MB-2013-10-18-Targeted_DNAseq_Medulloblastoma_ICGC - samples
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
EGAD00001000699 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-24-09-2015-15:15:19:594-451 - samples
release_2: ICGC PedBrain: whole genome sequencing
EGAD00001001625 | EGA
Genomicsena-DATASET-DKFZ-IBIOS-01-10-2015-13:10:12:691-131 - samples
release_2: ICGC PedBrain: whole genome bisulfite sequencing
EGAD00001001630 | EGA
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