Binder H H - OmicsDI

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Unknown (1269)
Proteomics (74)
Transcriptomics (47)
Genomics (13)
Metabolomics (10)
Other (2)

Organisms

Chlamydomonas reinhardtii (56)
Enterococcus mundtii CRL35 (56)
Oncorhynchus tshawytscha (56)
Pseudomonas canadensis (56)
Human alphaherpesvirus 1 strain 17 (56)
Marchantia polymorpha subsp. ruderalis (56)
Methylocystis sp. (56)
Exiguobacterium sp. SH31 (56)
Amaranthus tricolor (56)
Porites pukoensis (56)
Porphyromonas gingivalis W83 (56)
Human betaherpesvirus 5 (56)
Bothrops insularis (56)
Bothrops jararaca (56)
Bothrops jararacussu (56)
Bothrops cotiara (56)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (56)
Severe acute respiratory syndrome coronavirus 2 (56)
Dinosauria (56)
Homo sapiens (40)
Mus musculus (15)
Serendipita indica (2)
Drosophila melanogaster (2)
Xylella fastidiosa (1)
Schizosaccharomyces pombe (1)
Oryza sativa (1)
Hordeum vulgare (1)
Pseudomonas aeruginosa (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)

Organisms

Hordeum vulgare subsp. vulgare (2)
Homo sapiens (2)
Hordeum vulgare (1)
Drosophila melanogaster (1)
Mus musculus (1)

Repository

pride (56)
biostudies-arrayexpress (51)
jPOST (10)
MetaboLights (10)
ENA (7)
MassIVE (6)
geo (3)
iProX (2)
GPMDB (1)

Tissue

Cell culture (28)
Skin (3)
Brain (3)
Permanent cell line cell (3)
Bone (2)
Placenta (2)
Dendritic cell (2)
HeLa cell (2)
B cell (2)
Carcinoma cell (1)
Amniotic fluid (1)
Embryonic stem cell (1)
Egg (1)
Early embryonic cell (1)
Feces (1)
Cell suspension culture (1)
Blood plasma (1)
Tendon (1)
Fibroblast (1)
Hepatocyte (1)
Epithelial cell (1)
Kidney (1)
Saliva (1)
Blood cell (1)
Colon (1)

Disease

Acute leukemia (3)
Colon cancer (2)
Mock infection (1)
Ovarian cancer (1)
Not Available (1)
Pancreatic carcinoma (1)
Diffuse large B-cell lymphoma germinal center B-cell type (1)
Diffuse large B-cell lymphoma activated B-cell type (1)
Irritable bowel syndrome (1)
Lymphoma (1)
Cervix carcinoma (1)
Brain cancer (1)
Liver cancer (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (29)
Mass spectrometry (9)
Bottom-up proteomics (9)
Data-dependent acquisition (7)
Affinity purification coupled with mass spectrometry proteomics (7)
Affinity proteomics (3)
Data-independent acquisition (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Top-down proteomics (2)
NMR spectroscopy (1)
Proteogenomics (1)

Instrument Platform

Direct infusion MS - positive (3)
Illumina HiSeq 1500 (2)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina) (1)
RNeasy Plant Mini Kit (QIAGEN) (1)
2D clinostat (1)
MouseWG-6_V2_0_R3_11278593_A (1)
Agilent® 2100 Bioanalyzer Instrument (1)
None (1)
QuantStudioTM 12K Flex system (1)
Illumina HiScanSQ (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
NA (1)
Illumina MiSeq (1)
Instrument (1)
Q Exactive (1)
Orbitrap Exploris 480 (1)
Liquid Chromatography MS (1)
Direct infusion MS - negative (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2021 (23)
2025 (21)
2023 (16)
2022 (9)
2013 (9)
2012 (8)
2015 (7)
2024 (7)
2026 (6)
2014 (5)
2010 (4)
2016 (3)
2011 (3)
2007 (3)
2020 (2)
2017 (2)
2009 (2)
2008 (2)
2019 (2)
2006 (1)
2002 (1)
2018 (1)

CHEBI ID

CHEBI:84304 (3)
CHEBI:64561 (3)
CHEBI:16113 (3)
CHEBI:17154 (3)
CHEBI:16467 (3)
CHEBI:15891 (3)
CHEBI:21547 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:64565 (3)
CHEBI:64563 (3)
CHEBI:17368 (3)
CHEBI:142374 (2)
CHEBI:136209 (2)
CHEBI:136211 (2)
CHEBI:167289 (2)
CHEBI:167288 (2)
CHEBI:167293 (2)
CHEBI:167291 (2)
CHEBI:167292 (2)
CHEBI:142372 (2)
CHEBI:167290 (2)
CHEBI:136199 (2)
CHEBI:136202 (2)
CHEBI:140496 (2)
CHEBI:167287 (2)
CHEBI:136193 (2)
CHEBI:167285 (2)
CHEBI:167286 (2)
CHEBI:136197 (2)

Metabolite Name

Choline (3)
Creatine (3)
Hydantoin (2)
Dimethylallyl pyrophosphate (2)
7,7'-Dihydroxy-6,8'-bicoumarin (2)
Normetanephrine (2)
6-Methyladenine (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Lactic acid (2)
L-Pipecolic acid (2)
Allantoic acid (2)
Isonicotinic acid (2)
Picolinic acid (2)
3-Oxocholic acid (2)
Uracil (2)
Protoporphyrin IX (2)
Phenylacetylglutamine (2)
L-Dopa (2)
Glycochenodeoxycholic acid (2)
2-Hydroxybutyric acid (2)
Pantothenol (2)
L-Proline (2)
4-Pyridoxic acid (2)
7-Methylguanine (2)
Mannitol (2)
Kynurenine (2)
Benzoic acid (2)
L-Arginine (2)
N-Acetyl-L-glutamic acid (2)
L-Ornithine (2)

First Public Date

2014 (3)
2019 (2)
2021 (1)
2017 (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (9)
Comparative genomic hybridization by array (6)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by RT-PCR (2)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2025 (162)
2021 (155)
2023 (141)
2020 (138)
2022 (133)
2024 (111)
2019 (77)
2018 (73)
2017 (66)
2015 (45)
2016 (38)
2013 (34)
2014 (29)
2026 (26)
2012 (25)
2011 (21)
2010 (14)
2009 (10)
2008 (7)
2007 (4)
2006 (3)
2002 (3)
2003 (2)
2005 (1)
2004 (1)
1998 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Zhejiang University, China (2)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Intravacc, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands (1)
Department of Pathology, Medical University of Vienna, Austria (1)
Department of Chemistry, Yale University, New Haven, CT, USA (1)
Babraham Institute Cambridge, UK (1)
Assistant Professor of Biochemistry Assistant Professor in Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
Assistant Professor of Biochemistry Assistant Professor of Neurobiology Nanaline Duke Room 155 Box 3711, DUMC Durham, NC 27710 (1)
1 Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee (1)
Biomedical Research Novartis Pharma AG (1)
Chair of Proteomics and Bioanalytics, TUM School of Life Sciences, Technical University of Munich, 85354 Freising, Germany (1)
Institute of Medical Microbiology University of Zurich Gloriastrasse 28/30 CH-8006 Zürich/Switzerland Office: +41 (0)44 634 53 96 Lab1: +41 (0)44 634 53 24 Lab2: +41 (0)44 634 53 37 homepage: http://www.imm.uzh.ch/research/experimental/teamseeger.html Attachments area (1)
Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland (1)
Institute of Biochemistry II, Goethe University Frankfurt,Medical Faculty, Theodor-Stern-Kai 7, 60590 Frankfurt, Germany. (1)
Department of Obstetrics Gynaecology and Newborn Health, The University of Melbourne, Australia (1)
Cell and Chemical Biology LUMC Leiden The Netherlands (1)
Technical University of Munich Chair of Proteomics and Bioanalytics Emil-Erlenmeyer-Forum 5 85354 Freising, Germany (1)
Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, Scotland (1)
Division Systems Biology of Signal Transduction German Cancer Research Center (DKFZ) Im Neuenheimer Feld 280 69120 Heidelberg, Germany (1)
Systems Biology Ireland, University College Dublin. (1)
Department of Biosciences & Medical Biology, Paris Lodron University of Salzburg, Austria. (1)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Max Planck Institute of Psychiatry Kraepelinstrasse 2 80804 Munich Germany (1)
Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK; Department of Pharmacology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1PD, UK. (1)
Molecular Cell Biolody, Weizmann Institute of Science. (1)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2 Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Faculty of Biology, Technion - Israel institute of technology (1)
Natural History Museum of Denmark University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen, Denmark (1)
Helen Jo Whitsell Endowed Professor and Chair Department of Chemical Physiology and Biochemistry, OHSU, Portland OR, USA (1)

Tags

xref:PubMed:11687795 (1)
xref:PubMed:22810585 (1)
xref:PubMed:29206227 (1)
xref:PubMed:18156132 (1)
xref:PubMed:34723340 (1)

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Transcription profiling by array of Huh7.5 cells infected with Hepatitis C Virus Jc1

Huh7/5-2 cells (Binder et al., Hepatology 2007) were mock infected (DMEM) (time points 4 and 48 h) or infected with the chimeric HCV virus Jc1 (Pietschmann et al., PNAS 2006) (all time points). Multiplicity of infection was 15 (TCID50). Cells were lysed after 4, 12, 24, 48 and 72 hours post infecti...

ORGANISM(S): Homo sapiens

2012-06-30 | E-MTAB-1148 | biostudies-arrayexpress

Characterization of RA839, a non-covalent small-molecule binder to Keap1 and selective activator of Nrf2 signalling

The activation of the transcription factor NF-E2-related factor 2 (Nrf2) maintains cellular homeostasis in response to oxidative stress by the regulation of multiple cytoprotective genes. Without stressors the activity of Nrf2 is inhibited by its interaction with the kelch-like ECH-associated protei...

ORGANISM(S): Mus musculus

2015-10-31 | E-GEOD-71695 | biostudies-arrayexpress

From Ancient Techniques to Modern Solutions: In Situ Synthesis of C-S-H for Sandstone Conservation.

Not available

S-EPMC12362824 | biostudies-literature

Protein binder based IP-MS of SLC12A6 (KCC3) in Hek293WT OE cell lines

Specific protein binders with high affinity, such as antibodies or nanobodies, are scarce for most solute carrier (SLCs) transporters. Moreover, general approaches that can systematically generate binders for multi-transmembrane proteins, such as SLCs, channels or GPCRs, are still missing. Purifying...

ORGANISM(S): Homo sapiens (Human)

2024-06-17 | PXD046995 | Pride

Transcription profiling of HUVEC infected with recombinant adenoviruses expressing EGR-1 or empty control viruses at a MOI of 100. RNA was isolated from the cells at the time points 16 h, 24 h and 48 h post infection

The target genes of the transcription factor early growth response-1 (EGR-1) were studied in human umbilical vein endothelial cells (HUVEC). Densely cultured HUVEC were infected with recombinant adenoviruses expressing EGR-1 or empty control viruses at a MOI of 100. RNA was isolated from the cells a...

ORGANISM(S): Homo sapiens

2007-10-27 | E-GEOD-2299 | biostudies-arrayexpress

PTFE as a Multifunctional Binder for High-Current-Density Oxygen Evolution.

Not available

S-EPMC11538630 | biostudies-literature

Binder-free TiO₂ hydrophilic film covalently coated by microwave treatment.

Not available

S-EPMC7538130 | biostudies-literature

Composition, Respirable Fraction and Dissolution Rate of 24 Stone Wool MMVF with their Binder.

Not available

S-EPMC5547462 | biostudies-literature

An environment-friendly crosslinked binder endowing LiFePO₄ electrode with structural integrity and long cycle life performance.