Bio-processing - OmicsDI

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Transcriptomics (769)
Unknown (609)
Proteomics (162)
Genomics (91)
Metabolomics (19)
Genomic (1)

Organisms

Homo sapiens (294)
Mus musculus (158)
Arabidopsis thaliana (56)
Saccharomyces cerevisiae (32)
Caenorhabditis elegans (28)
Rattus norvegicus (26)
Drosophila melanogaster (15)
Gallus gallus (13)
Danio rerio (11)
Ciona intestinalis (10)
Oryza sativa (6)
Bos taurus (6)
Sus scrofa (6)
Zea mays (5)
Oncorhynchus mykiss (5)
Streptococcus pneumoniae (4)
Pinus pinaster (3)
Thermus thermophilus HB8 (3)
Populus trichocarpa x Populus deltoides (3)
Schizosaccharomyces pombe 972h- (3)
Fundulus heteroclitus (3)
Helicoverpa armigera (3)
Salmo salar (3)
Ovis aries (3)
Escherichia coli (3)
Candida albicans (3)
Talaromyces marneffei (2)
Aplysia californica (2)
Solanum chacoense (2)
Coregonus clupeaformis (2)

Organisms

Homo sapiens (14)
Mus musculus (7)
Rattus norvegicus (3)
Solanum lycopersicum var. cerasiforme (2)
unidentified (2)
Solanum lycopersicum (2)
Saccharomyces cerevisiae (2)
Apteronotus albifrons (1)
Gossypium raimondii (1)
Pseudomonas aeruginosa PA14 (1)
Callithrix jacchus (1)
Sus scrofa (1)
Oncorhynchus mykiss (1)
Glycine max (1)
Chlamydomonas reinhardtii (1)

Repository

biostudies-arrayexpress (796)
pride (146)
ENA (53)
MetaboLights (19)
geo (10)
MassIVE (8)
EGA (7)
iProX (5)
jPOST (3)
dbGaP (1)

Tissue

Cell culture (23)
Brain (17)
Epithelial cell (11)
Blood plasma (10)
Blood (6)
Leaf (5)
Heart (4)
B cell (4)
Plant cell (3)
Fibroblast (3)
Lung (3)
Monocyte (3)
T cell (3)
B-cell chronic lymphocytic leukemia cell (2)
Cerebrospinal fluid (2)
Macrophage (2)
Blood serum (2)
Stem cell (2)
Hepatocyte (2)
Permanent cell line cell (2)
Kidney (2)
Saliva (2)
Liver (2)
Blood cell (2)
Colon (2)
Ovarian surface epithelial cell line (1)
Stromal cell of ovarian cortex (1)
Femorotibial joint (1)
Olfactory epithelial cell (1)
Blood clot (1)

Disease

Normal (4)
Breast cancer (4)
Malignant neoplasm of ovary (4)
Severe acute respiratory syndrome (3)
Cardiovascular system disease (3)
Kaposi's sarcoma (2)
Multiple myeloma (2)
Chronic lymphocytic leukemia (2)
"lung disease: control, Diagnosis: non-small cell squamous cell carcinoma" (1)
Retinoblastoma (1)
Measles virus infected (1)
Chondroblastoma (1)
Mock infected (1)
Colon carcinoma (1)
Normal (1)
Temporal lobe epilepsy (1)
Viral myocarditis (1)
Obese (1)
Chicken Anaemia Virus infected (1)
Psoroptes ovis infestation (1)
None (1)
Prostate carcinoma (1)
Adenocarcinoma (1)
Non infected (1)
H9N2 infected (1)
Emphysema (1)
Herpes zoster (1)
Aspergillosis (1)
Recurrent urinary tract infections (1)
Sepsis (1)

Technology Type

Mass Spectrometry (146)
Shotgun proteomics (74)
Bottom-up proteomics (29)
Mass spectrometry (18)
Data-dependent acquisition (18)
SWATH MS (17)
Gel-based experiment (17)
Affinity purification coupled with mass spectrometry proteomics (13)
Data-independent acquisition (12)
Top-down proteomics (5)
DiaPASEF (3)
Affinity proteomics (2)
MSE (2)
Mass spectrometry assay (1)
SomaScan affinity proteomics (1)
HDMSE (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (20)
Illumina HiSeq 2500 (16)
NextSeq 500 (12)
NextSeq 2000 (11)
Illumina HiSeq 2000 (10)
Illumina HiSeq 4000 (8)
ScanArray 5000 [PerkinElmer] (6)
Illumina NovaSeq X (6)
NextSeq 550 (6)
Genepix (4)
G2565AA DNA microarray scanner [Agilent] (3)
ScanArray [PerkinElmer] (2)
418 [Affymetrix] (2)
Scanning hardware (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
TruSeq Stranded Total RNA kit (Illumina) (1)
Lab Bench (1)
Agilent (1)
Mac (1)
Non (1)
10X Genomics Chromium Controller (1)
Computer (1)
Wet Lab (1)
Tissue Culture Lab (1)
10X Genomics Chromium (1)
Solexa 2G Genome Analyzer (1)
SureScan Dx (1)
Agilent 2100 Bioanalyzer (1)
BAS-1800 [FUJIFILM] (1)

Publication Date

2010 (139)
2012 (127)
2011 (121)
2008 (71)
2025 (62)
2009 (61)
2013 (47)
2026 (44)
2014 (36)
2024 (33)
2021 (31)
2022 (30)
2015 (28)
2023 (27)
2007 (24)
2020 (20)
2018 (20)
2016 (15)
2006 (15)
2019 (13)
2017 (9)
2005 (8)
2004 (4)

CHEBI ID

CHEBI:22653 (7)
CHEBI:28300 (7)
CHEBI:16811 (7)
CHEBI:26271 (7)
CHEBI:25094 (7)
CHEBI:29016 (7)
CHEBI:17822 (6)
CHEBI:26986 (6)
CHEBI:16708 (6)
CHEBI:16235 (6)
CHEBI:18237 (6)
CHEBI:24898 (6)
CHEBI:28044 (6)
CHEBI:18186 (6)
CHEBI:16695 (6)
CHEBI:24813 (5)
CHEBI:17553 (5)
CHEBI:17821 (5)
CHEBI:15891 (5)
CHEBI:18012 (5)
CHEBI:17568 (5)
CHEBI:16040 (5)
CHEBI:27897 (5)
CHEBI:15428 (5)
CHEBI:44897 (5)
CHEBI:18257 (5)
CHEBI:17368 (5)
CHEBI:25017 (5)
CHEBI:17154 (5)
CHEBI:27570 (5)

Metabolite Name

Undecanedioic acid (3)
L-Tyrosine (3)
Sebacic acid (3)
Arginine (3)
AMP (3)
UMP (3)
L-Glutamine (3)
His-Glu (2)
Trans-zeatin (2)
Tyr-Ser (2)
Guanosine diphosphate mannose (2)
His-Ala-Lys (2)
Acetohexamide (2)
UDP-D-Galactose (2)
Glu-Pro (2)
Docosatetraenoic acid (2)
Dihomo-alpha-linolenic acid (2)
Mevastatin (2)
5-methyluridine (2)
Ovothiol (2)
Hexitol (2)
Hexose phosphate (2)
Glutamate-semialdehyde (2)
Trypanothione-disulfide (2)
S-adenosylmethionine (2)
Dimethylarginine (2)
Coumarate (2)
Acetyl-serine (2)
Glycerophosphocholine (2)
Indoleacrylic acid (2)

First Public Date

2014 (13)
2026 (7)
2024 (7)
2025 (5)
2013 (5)
2023 (3)
2021 (3)
2017 (3)
2022 (2)
2018 (2)
2020 (1)
2019 (1)
2016 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (567)
RNA-seq of coding RNA (74)
Transcription profiling by tiling array (23)
ChIP-seq (19)
Comparative genomic hybridization by array (16)
ChIP-chip by tiling array (13)
ChIP-chip by array (8)
RNA-seq of total RNA (7)
Unknown experiment type (6)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (6)
RNAi profiling by array (5)
DNA-seq (5)
RNA-seq of coding RNA from single cells (5)
Other (4)
Methylation profiling by array (4)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
Human - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Genotyping by high throughput sequencing (2)
Animal - Two-color microarray (1)
Baseline (1)
Differential (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)

Release Date

2010 (140)
2012 (132)
2011 (125)
2025 (114)
2022 (110)
2023 (84)
2024 (77)
2008 (72)
2021 (67)
2009 (62)
2018 (53)
2013 (53)
2020 (52)
2019 (44)
2026 (40)
2015 (40)
2014 (38)
2016 (31)
2007 (24)
2017 (21)
2006 (15)
2005 (9)
2004 (2)

Lab affiliation

David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
PrognomiQ Inc. (2)
Center for Neuroscience and Cell Biology (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
EDyP (2)
Professor, Centre for Microbiome Research, Queensland University of Technology | Translational Research Institute (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Institute for Surgical Pathology, Medical Center – University of Freiburg, Faculty of Medicine, University of Freiburg, Germany (1)
Molecular Evolution, Department of Cell and Molecular Biology, Science for Life Laboratory, Biomedical Centre, Uppsala University, SE-751 24 Uppsala, Sweden (1)
Associate Professor, Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong SAR (1)
Assistant Professor, Dept of Obstetrics & Gynaecology, Faculty of Medicine, The Ubiversity of Hong Kong (1)
Assistant Professor Biomedical and Pharmaceutical Sciences Department, ChapmanUniversity School of Pharmacy, Irvine,California, USA (1)
Discovery Proteomics Facility, Target Discovery Institute,University of Oxford (1)
Unité de recherche en biologie et épidémiologie parasitaires (URBEP) – UMR6236 – IFR48, Institut de Recherche Biomédicale des Armées (IRBA), antenne Marseille, URMITE UMR 6236, GSBdD de Marseille Aubagne, 111 avenue de la corse BP 40026, 13568 Marseille cedex 02, France. (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Assistant Professor DEPARTMENT OF OBSTETRICS & GYNAECOLOGY Faculty of Medicine The University of HOng Kong (1)
Li Lab ,Department of Neurology, University of California San Francisco (1)
Institute of Biomedical Chemistry laboratory of microsomal oxidation (1)
Yale Cancer Biology Institute, Yale School of Medicine (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (lab head) (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
Centro Andaluz de Biologia del Desarrollo Pablo de Olavide University Carretera de Utrera, Km 1 41013 Seville, Spain (1)
Laboratório de Biotecnologia e Biologia Molecular da Universidade Estadual do Ceará, Fortaleza, Ceará, Brazil. Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Fortaleza, Ceará, Brazil. (1)
Department of Clinical Sciences, Cornell University, Ithaca, NY, USA Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California-Davis, Davis, CA, USA (1)
PRISM laboratory, Inserm U1192, University of Lille (1)
Chair, Dept of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada (1)
Discovery Proteomics Facility, Oxford (1)

1657 Results

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