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Transcriptomics
(2092)
Unknown
(1337)
Proteomics
(798)
Genomics
(338)
Metabolomics
(285)
Other
(20)
Models
(13)
Multiomics
(4)
Organisms
Homo sapiens
(801)
Mus musculus
(600)
Arabidopsis thaliana
(182)
Saccharomyces cerevisiae
(104)
Rattus norvegicus
(84)
Drosophila melanogaster
(57)
Caenorhabditis elegans
(36)
Escherichia coli
(27)
Zea mays
(21)
Gallus gallus
(18)
Sus scrofa
(17)
Vitis vinifera
(14)
Chlamydomonas reinhardtii
(13)
Aspergillus niger
(12)
Oryza sativa
(12)
Bos taurus
(12)
Escherichia coli str. K-12 substr. MG1655
(11)
Triticum aestivum
(11)
Danio rerio
(11)
Mycobacterium tuberculosis
(11)
Streptomyces coelicolor
(10)
Schizosaccharomyces pombe
(9)
Glycine max
(9)
Pseudomonas aeruginosa
(9)
synthetic construct
(8)
Medicago truncatula
(8)
Anopheles gambiae
(7)
Methanothermobacter thermautotrophicus
(2)
Methanothermobacter marburgensis str. Marburg
(1)
Methanothermobacter thermautotrophicus str. Delta H
(1)
Organisms
Parageobacillus thermoglucosidasius
(3)
Clostridium autoethanogenum
(2)
Pseudomonas putida
(2)
unidentified
(2)
Exiguobacterium abrahamii
(1)
Tsukamurella sp. M9C
(1)
Cladosporium sp. HD 4-13
(1)
Pseudomonas oleovorans subsp. oleovorans
(1)
Shouchella lehensis
(1)
Novacetimonas maltaceti
(1)
Cryobacterium sp. AP23
(1)
Aspergillus sydowii
(1)
Phanerodontia chrysosporium
(1)
Paenibacillus sp. JNU01
(1)
Streptomyces sp. 796.1
(1)
Klebsiella sp. sp. O852
(1)
Corynebacterium glutamicum
(1)
Shewanella oneidensis MR-1
(1)
Streptomyces albidoflavus
(1)
Alcaligenes nematophilus
(1)
Aspergillus cristatus
(1)
insect gut metagenome
(1)
Streptomyces sp.
(1)
uncultured bacterium
(1)
Rhodococcus qingshengii
(1)
marine metagenome
(1)
Staphylococcus aureus
(1)
Bacillus velezensis
(1)
rhizosphere metagenome
(1)
Repository
biostudies-arrayexpress
(2316)
MassIVE
(448)
MetaboLights
(285)
jPOST
(198)
ENA
(74)
iProX
(50)
EGA
(36)
PeptideAtlas
(34)
PAXDB
(31)
PanoramaPublic
(28)
GPMDB
(17)
FAIRDOMHub
(9)
pride
(9)
EVA
(8)
geo
(8)
BioModels
(4)
Tissue
Others
(23)
Prokaryotic cell
(2)
Cell culture
(1)
Cell suspension culture
(1)
Photosynthetic cell
(1)
Disease
Normal
(14)
Severe acute respiratory syndrome
(2)
Healthy
(2)
Reference
(2)
Lymphoblastic leukemia
(1)
Osteosarcoma subtype fibroblastic
(1)
Uterine fibroid
(1)
Glaucoma
(1)
Wounded; tumour
(1)
Metabolic syndrome
(1)
Nondiabetic
(1)
Adenoma
(1)
Replicate control
(1)
Lung adenocarcinoma
(1)
Uninfected 11dpi
(1)
Spindle cell tumor
(1)
Not applicable
(1)
Myeloid neoplasm
(1)
Colon cancer Dukes C
(1)
Steatosis
(1)
Diffuse large B-cell lymphoma
(1)
Infected with Influenza A/WSN/33 (H1N1)
(1)
Chronic granulomatous disease
(1)
Primary tumor
(1)
Breast adenocarcinoma
(1)
Control
(1)
IRAK-4 Q293X mutation
(1)
Parkinson's disease
(1)
Multiple congenital malformation
(1)
Phytophthora capsici infected
(1)
Technology Type
Mass spectrometry
(191)
Mass spectrometry assay
(83)
NMR spectroscopy
(13)
Mass Spectrometry
(9)
Shotgun proteomics
(4)
Illumina HiSeq 2000
(3)
Data-independent acquisition
(2)
Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HiSeq 1000
(1)
454 GS FLX Titanium, Illumina HiSeq 2000
(1)
Affinity purification coupled with mass spectrometry proteomics
(1)
Gel-based experiment
(1)
MSE
(1)
SWATH MS
(1)
Instrument Platform
Illumina NovaSeq 6000
(102)
NextSeq 500
(38)
Illumina HiSeq 2500
(30)
Illumina HiSeq 2000
(29)
Illumina NovaSeq X
(19)
Illumina MiSeq
(19)
Illumina HiSeq 4000
(19)
NextSeq 2000
(13)
NextSeq 550
(10)
Illumina Genome Analyzer IIx
(5)
Scanning hardware
(5)
NA
(4)
ArrayWoRx Biochip Reader [Applied Precision]
(3)
NextSeq 1000
(3)
PromethION
(2)
Bio-Rad CFX96 Real-time System
(2)
BD LSRFortessa
(2)
Illumina Genome Analyzer
(2)
Other
(2)
Illumina Genome Analyzer II
(2)
Affymetrix Fluidics Station 400
(2)
N/a
(2)
GridION
(2)
DNBSEQ-T7
(2)
HiSeq X Ten
(2)
Illumina HiSeq 1500
(2)
Agilent high resolution microarray scanner
(1)
3 L BioFlo®/CelliGen® 115 Bioreactor (New Brunswick Scientific)
(1)
HPC cluster Lobo
(1)
In-house Perl scripts
(1)
Publication Date
2010
(286)
2014
(264)
2012
(260)
2013
(244)
2011
(234)
2015
(219)
2025
(195)
2016
(186)
2008
(176)
2024
(165)
2026
(161)
2023
(141)
2022
(136)
2021
(129)
2009
(102)
2020
(100)
2007
(93)
2017
(70)
2019
(57)
2018
(50)
2005
(38)
2006
(30)
2004
(4)
2003
(1)
2001
(1)
UNIPROT ID/AC
1433E_SHEEP
(6)
1433Z_SHEEP
(6)
6PGD_SHEEP
(6)
A1AT_SHEEP
(6)
A8DR93_SHEEP
(6)
AL1A1_SHEEP
(6)
ALBU_SHEEP
(6)
ANT3_SHEEP
(6)
ANXA2_SHEEP
(6)
CERU_SHEEP
(6)
COF1_SHEEP
(6)
FETUA_SHEEP
(6)
G3P_SHEEP
(6)
HBB_SHEEP
(6)
IDHC_SHEEP
(6)
PDXK_SHEEP
(6)
PLMN_SHEEP
(6)
SODC_SHEEP
(6)
THIO_SHEEP
(6)
TTHY_SHEEP
(6)
W5NPN4_SHEEP
(6)
W5NQ45_SHEEP
(6)
W5NUE3_SHEEP
(6)
W5NUN8_SHEEP
(6)
W5NUX8_SHEEP
(6)
W5NVC9_SHEEP
(6)
W5NXN2_SHEEP
(6)
W5NY95_SHEEP
(6)
W5NYA7_SHEEP
(6)
W5P1X9_SHEEP
(6)
ENSEMBL ID
ENSG00000170477
(18)
ENSG00000147251
(9)
ENSG00000247315
(7)
ENSG00000204131
(2)
CHEBI ID
CHEBI:13388
(4)
CHEBI:66915
(4)
CHEBI:15429
(4)
CHEBI:3795
(4)
CHEBI:60061
(4)
CHEBI:60060
(4)
CHEBI:3789
(4)
CHEBI:27937
(4)
CHEBI:23329
(4)
CHEBI:58563
(4)
CHEBI:60487
(4)
CHEBI:58502
(4)
CHEBI:58504
(4)
CHEBI:13328
(4)
CHEBI:62830
(4)
CHEBI:57510
(4)
CHEBI:58756
(4)
CHEBI:57477
(4)
CHEBI:57649
(4)
CHEBI:18276
(4)
CHEBI:15083
(4)
CHEBI:14444
(4)
CHEBI:58201
(4)
CHEBI:11886
(4)
CHEBI:11195
(4)
CHEBI:11474
(4)
CHEBI:68623
(4)
CHEBI:14699
(4)
CHEBI:10066
(4)
CHEBI:12635
(4)
Metabolite Name
Adenosine
(43)
Hypoxanthine
(43)
Taurine
(37)
Adenine
(35)
Uracil
(34)
Guanosine
(34)
Creatine
(34)
Inosine
(34)
Choline
(33)
Glutamine
(33)
Glycine
(32)
Betaine
(32)
Pyroglutamic acid
(32)
Methionine
(32)
Serine
(31)
Creatinine
(31)
Tyrosine
(30)
Guanine
(30)
Phenylalanine
(30)
Tryptophan
(30)
L-Tryptophan
(29)
Xanthine
(29)
Uridine
(29)
Leucine
(28)
Citric acid
(28)
Lysine
(27)
L-Phenylalanine
(27)
Thymine
(26)
Ornithine
(26)
Alanine
(26)
First Public Date
2024
(12)
2026
(11)
2025
(9)
2018
(7)
2023
(6)
2022
(6)
2017
(6)
2019
(5)
2021
(4)
2013
(3)
2016
(2)
2020
(1)
2015
(1)
2014
(1)
Modelling Approach
Constraint-based model
(4)
Lab affiliation
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(1)
Departament de Bioquímica i Biologia Molecular, Facultat de Ciències Biològiques, Universitat de València, Burjassot (València), Spain
(1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu
(1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu, Tartu, Estonia
(1)
Institute for Biochemistry and Pathobiochemistry Microbial Biochemistry Ruhr University Bochum
(1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(1)
University of Tübingen Center for Applied Geosciences Environmental Biotechnology Group
(1)
ValgepeaLab, Institute of Bioengineering, University of Tartu
(1)
WWU Münster (IBBP)
(1)
Tags
pathogen
(8)
pathogen:bacterium
(6)
xref:PubMed:17355176
(2)
xref:PubMed:15001713
(2)
xref:PubMed:17355172
(2)
xref:PubMed:17355171
(2)
xref:PubMed:41260329
(2)
xref:PubMed:15845853
(2)
pathogen:fungus
(2)
xref:PubMed:19633107
(1)
xref:PubMed:8294238
(1)
xref:PubMed:8294237
(1)
xref:PubMed:37854702
(1)
xref:PubMed:18637951
(1)
xref:PubMed:35656003
(1)
xref:PubMed:35497340
(1)
xref:PubMed:38871051
(1)
xref:PubMed:39724714
(1)
xref:PubMed:20733077
(1)
xref:PubMed:23326236
(1)
xref:PubMed:27855214
(1)
xref:PubMed:22170421
(1)
xref:PubMed:42354979
(1)
xref:PubMed:21036604
(1)
IsPrivate
False
(4)
Submitter Keywords
FROG
(3)
Classification
bacteria
(6)
fungi
(2)
Study type
Transcription profiling by array
(1310)
RNA-seq of coding RNA
(318)
ChIP-seq
(137)
RNA-seq of coding RNA from single cells
(64)
Methylation profiling by high throughput sequencing
(62)
Unknown experiment type
(57)
Comparative genomic hybridization by array
(57)
Other
(49)
RNA-seq of non coding RNA
(43)
Methylation profiling by array
(30)
ChIP-chip by tiling array
(23)
DNA-seq
(20)
ChIP-chip by array
(15)
Transcription profiling by RT-PCR
(11)
ATAC-seq
(11)
RNA-seq of total RNA
(10)
Transcription profiling by SAGE
(9)
Transcription profiling by tiling array
(8)
Genotyping by array
(8)
Genotyping by high throughput sequencing
(8)
Cell line - High-throughput sequencing
(6)
Bisulfite-seq
(5)
Hi-C
(5)
Human - Single-cell sequencing
(3)
Cell line - One-color microarray
(3)
High-throughput sequencing
(3)
4C
(3)
CUT&RUN
(3)
RNA-seq of non coding RNA from single cells
(2)
CLIP-Seq
(2)
Release Date
2010
(292)
2014
(280)
2012
(276)
2013
(257)
2011
(242)
2015
(239)
2025
(213)
2016
(204)
2008
(186)
2021
(169)
2024
(167)
2022
(167)
2023
(144)
2020
(131)
2009
(113)
2018
(106)
2019
(102)
2007
(97)
2026
(93)
2017
(87)
2005
(38)
2006
(36)
2004
(5)
2003
(5)
2002
(3)
2001
(1)
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Marine biocatalysts
Screening for biocatalysts in marine samples
PRJEB111366
|
ENA
Cite
Strategies for designing biocatalysts with new functions.
Not available
S-EPMC10946311
|
biostudies-literature
Cite
Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics.
Not available
S-EPMC5335836
|
biostudies-literature
Cite
Selecting Better Biocatalysts by Complementing Recoded Bacteria.
Not available
S-EPMC10107544
|
biostudies-literature
Cite
Developing deprotectase biocatalysts for synthesis.
Not available
S-EPMC11389852
|
biostudies-literature
Cite
Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts.
Not available
S-EPMC4810074
|
biostudies-literature
Cite
Selection of biocatalysts for chemical synthesis.
Not available
S-EPMC1413619
|
biostudies-literature
Cite
Improving the catalytic performance of
Pichia pastoris
whole-cell biocatalysts by fermentation process.
Not available
S-EPMC9043429
|
biostudies-literature
Cite
Prospecting for novel biocatalysts in a soil metagenome.
Not available
S-EPMC201203
|
biostudies-literature
Cite
Chimeric self-sufficient P450cam-RhFRed biocatalysts with broad substrate scope.
Not available
S-EPMC3252848
|
biostudies-literature
Cite
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