Biochemical fractionation

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Unknown (416)
Proteomics (263)
Transcriptomics (89)
Genomics (55)
Other (7)
Metabolomics (4)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (175)
Alteromonadales (175)
Canis lupus familiaris (175)
Homo sapiens (81)
Mus musculus (15)
Drosophila melanogaster (10)
Saccharomyces cerevisiae (8)
Rattus norvegicus (4)
Caenorhabditis elegans (4)
Arabidopsis thaliana (4)
Chlamydomonas reinhardtii (2)
Tetrahymena thermophila (2)
Bos taurus (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Fusarium sinicum (2)
Aristolochia fimbriata (1)
Capsicum annuum (1)
Phaeodactylum tricornutum (1)
Tetranychus urticae (1)
Panonychus citri (1)
synthetic construct (1)
Entamoeba histolytica (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Oxytricha trifallax (1)
Salmonella enterica (1)
Danio rerio (1)
Toxoplasma gondii ME49 (1)
Hepatitis B virus (1)

Organisms

Homo sapiens (25)
Mus musculus (6)
Danio rerio (2)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Saccharomyces cerevisiae (1)

Repository

pride (175)
biostudies-arrayexpress (68)
ENA (42)
MassIVE (38)
geo (35)
jPOST (22)
PAXDB (9)
PeptideAtlas (9)
GPMDB (6)
iProX (6)
MetaboLights (4)
PanoramaPublic (4)

Tissue

Cell culture (40)
Brain (17)
Liver (8)
Embryonic stem cell (6)
Epithelial cell (6)
Plant cell (6)
Plasma Non-glyco (4)
Cell suspension culture (4)
Permanent cell line cell (4)
T cell (4)
Blood cell (3)
Blood plasma (3)
Embryo (3)
Hepatocyte (3)
Kidney (3)
Leaf (3)
Photosynthetic cell (3)
Root (3)
Skeletal muscle (3)
Whole body (3)
Bone marrow (2)
Breast (2)
Culture condition:yeast extract-grown cell (2)
Endosperm (2)
Fibroblast (2)
Heart (2)
Keratinocyte (2)
Lung (2)
Brain (1)
Eye (1)

Disease

Breast cancer (7)
Not Available (6)
Disease free (5)
Cervix carcinoma (3)
Melanoma (3)
Alzheimer's disease (2)
Mixed disorder as reaction to stress (2)
Plasmodium falciparum malaria (2)
Vitamin B12 deficiency (1)
Acute leukemia (1)
Autism spectrum disorder (1)
Chagas disease (1)
Chronic inflammation (1)
Chronic myeloid leukemia (1)
Colorectal cancer (1)
Lung small cell carcinoma (1)
Marinesco-Sjogren syndrome (1)
Myofibrillar myopathy 6 (1)
Non-alcoholic steatohepatitis (1)
Obesity (1)
Paranoid schizophrenia (1)
Parkinson's disease (1)
Sturge-Weber syndrome (1)
Tuberculosis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (175)
Shotgun proteomics (104)
Bottom-up proteomics (40)
Affinity purification coupled with mass spectrometry proteomics (18)
Data-dependent acquisition (13)
SWATH MS (13)
Gel-based experiment (10)
Data-independent acquisition (4)
Mass spectrometry (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Top-down proteomics (3)
SRM/MRM (2)
Mass spectrometry assay (1)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Q Exactive (9)
LTQ Orbitrap Elite (8)
LTQ Orbitrap Velos (7)
Instrument (6)
LTQ (6)
Orbitrap Eclipse (4)
Orbitrap Exploris 480 (3)
Q Exactive Plus (3)
Retsch MM400 (2)
Illumina HiSeq 2500 (2)
Q Exactive HF (2)
Agilent 7890A GC coupled to a 5975C inert XL MSD (1)
Apex Q (1)
LTQ Orbitrap XL (1)
NHMFL 21T FT-ICR-MS (1)
Orbitrap Fusion ETD (1)
Q Exactive HF-X (1)
TimsTOF SCP (1)
TripleTOF 6600 (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
QExactive (1)

Publication Date

2025 (40)
2020 (36)
2023 (31)
2016 (29)
2024 (27)
2022 (26)
2021 (25)
2019 (22)
2011 (18)
2015 (16)
2026 (16)
2010 (15)
2013 (13)
2014 (12)
2018 (10)
2017 (9)
2012 (8)
2007 (3)
2009 (2)
2008 (2)
2005 (1)

UNIPROT ID/AC

1433B_SOYBN (3)
3847.GLYMA06G11530.1 (3)
3847.GLYMA08G11940.1 (3)
3847.GLYMA08G19320.1 (3)
3847.GLYMA11G00590.2 (3)
3847.GLYMA11G16411.1 (3)
3847.GLYMA14G06820.5 (3)
708D1_SOYBN (3)
7SB1_SOYBN (3)
A0A0R0E6R3_SOYBN (3)
A0A0R0EAL6_SOYBN (3)
A0A0R0EBC0_SOYBN (3)
A0A0R0EBJ7_SOYBN (3)
A0A0R0EDQ8_SOYBN (3)
A0A0R0EEF5_SOYBN (3)
A0A0R0EGK7_SOYBN (3)
A0A0R0EHX1_SOYBN (3)
A0A0R0EI48_SOYBN (3)
A0A0R0EJN3_SOYBN (3)
A0A0R0ELK1_SOYBN (3)
A0A0R0EQG6_SOYBN (3)
A0A0R0EQY1_SOYBN (3)
A0A0R0ESV8_SOYBN (3)
A0A0R0ETF9_SOYBN (3)
A0A0R0F3E9_SOYBN (3)
A0A0R0F859_SOYBN (3)
A0A0R0FAD9_SOYBN (3)
A0A0R0FB49_SOYBN (3)
A0A0R0FDD0_SOYBN (3)
A0A0R0FDV1_SOYBN (3)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000147251 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:86181, CHEBI:86137 (1)
CHEBI:86129, CHEBI:42027 (1)
CHEBI:85076, CHEBI:84234 (1)
CHEBI:83122 (1)
CHEBI:82724, CHEBI:83413 (1)
CHEBI:78268, CHEBI:79110 (1)
CHEBI:76325 (1)
CHEBI:76302, CHEBI:84746 (1)
CHEBI:75610, CHEBI:75577 (1)
CHEBI:74986, CHEBI:84839 (1)
CHEBI:74964 (1)
CHEBI:74910 (1)
CHEBI:74908 (1)
CHEBI:74907 (1)
CHEBI:74342, CHEBI:28610 (1)
CHEBI:73779, CHEBI:70744 (1)
CHEBI:73134, CHEBI:73004 (1)
CHEBI:73121, CHEBI:73008 (1)
CHEBI:68946, CHEBI:72651 (1)
CHEBI:65667 (1)
CHEBI:64554, CHEBI:27897 (1)
CHEBI:63961, CHEBI:57780, CHEBI:16462 (1)
CHEBI:60722 (1)
CHEBI:60286 (1)
CHEBI:60257, CHEBI:28229 (1)
CHEBI:60039, CHEBI:17203 (1)
CHEBI:58585, CHEBI:28718 (1)
CHEBI:58515, CHEBI:27592 (1)
CHEBI:58455, CHEBI:18347 (1)
CHEBI:58375, CHEBI:18095 (1)

Metabolite Name

Dodemorph (2)
Adenine (2)
L-Phenylalanine (2)
Skatol (1)
Simvastatin lactone (1)
Phosphatidylcholine(18:0/18:1w9) (1)
GPCho(34:0) (1)
GPCho(18:3n3/18:3n3) (1)
GPCho(18:2w6/18:2w6) (1)
N-Stearoylethanolamide (1)
12-Hydroxy-Octadecanoic Acid (1)
L-Hexanoic acid ester with (3-carboxy-2-hydroxypropyl)trimethylammonium hydroxide inner salt (1)
(Z)-N-[(E,2S,3R)-1,3-bis(oxidanyl)octadec-4-en-2-yl]docos-13-enamide (1)
(3R)-3-[(Z)-octadec-9-enoyl]oxy-4-(trimethylazaniumyl)butanoate (1)
(-)-Tetradecanoylcarnitine (1)
L-gamma-glutamyl-l-alpha-aminobutyrylglycine (1)
N-(1,5-dimethyl-3-oxidanylidene-2-phenyl-pyrazol-4-yl)methanamide (1)
C18 Sphingomyelin (1)
OSF (1)
N-L-gamma-Glutamyl-L-tyrosine (1)
2-amino-5-[(1-carboxy-2-phenyl-ethyl)amino]-5-keto-valeric acid (1)
DAG(32:0) (1)
(2S)-3-(5-mercapto-3-methyl-imidazol-4-yl)-2-(methylammonio)propionate (1)
NODULARIN (1)
Phosphatidylserine(38:4) (1)
Phosphatidylserine(36:1) (1)
C16 sphingomyelin (1)
PE(18:0/20:4w6) (1)
Elthon (1)
(R)-Dodecanoylcarnitine (1)

First Public Date

2026 (10)
2016 (7)
2024 (6)
2019 (4)
2023 (3)
2022 (3)
2025 (2)
2014 (2)
2013 (2)
2021 (1)
2020 (1)
2015 (1)

Modification

2x(15)N labeled L-lysine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (13)
RNA-seq of non coding RNA (10)
ChIP-chip by tiling array (8)
Other (5)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
Unknown experiment type (1)

Release Date

2021 (33)
2020 (33)
2022 (31)
2019 (31)
2013 (29)
2018 (28)
2011 (27)
2016 (26)
2015 (23)
2024 (23)
2010 (22)
2023 (22)
2014 (21)
2025 (21)
2012 (20)
2009 (17)
2006 (12)
2017 (10)
2008 (9)
2007 (8)
2005 (7)
2004 (7)
2003 (4)
2000 (4)
2001 (3)
2026 (2)
2002 (2)
1999 (2)
1998 (2)
1997 (2)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Associate Professor Department of Biochemistry Room 220, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2 (4)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (3)
Department of Chemistry and Chemical Biology, Harvard University (2)
Department of Molecular Cell Biology, Institute of Biochemistry, Splaiul Independentei 296, 060031 Bucharest 17, Romania (2)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Molecular Physiology & Biophysics, Wright Lab, University of Iowa, USA (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
Systems Inflammation group, Centre of Molecular Inflammation Research (CEMIR), and Department of Clinical and Molecular Medicine (IKOM), Norwegian University of Science and Technology, Norway (2)
1 Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, Canada. 2 Department of Chemistry, Université de Montréal, Montréal, Québec, Canada. 3 Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, Québec, Canada. (1)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada 2Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada Departments of Biochemistry and Biology, Boston University, 71 E. Concord St, Boston, MA 02118, USA (1)
Amsterdam UMC, University of Amsterdam, Department of Medical Biochemistry, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands. (1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India (1)
Associate Professor of Chemistry and Chemical Biology, DEPARTMENT of CHEMISTRY & CHEMICAL BIOLOGY, HARVARD UNIVERSITY (1)
Associate Professor, Whitehead Institute for Biomedical Research and Massachusetts Institute for Technology (1)
BIOCEV, First Faculty of Medicine, Charles University, 252 50 Vestec, Czech Republic (1)
BK21 Plus KNU Multi-Omics-based Creative Drug Research Team, College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Basic Sciences, College of Veterinary Medicine (1)
Ben May Department for Cancer Research, the University of Chicago, Chicago, IL 60637, USA. (1)
Bernstein Professor Emeritus in Adult Psychiatry Department of Psychiatry and Behavioral Sciences University of Minnesota Medical School (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Am Faßberg 11, 37077 Göttingen, Germany (1)
Biochemical Proteomics Group, Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biological Sciences, The University of Texas at El Paso (1)
Biologie der Mikroorganismen Ruhr-Universität Bochum (1)
Biology Department, UMass Boston, USA (1)

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Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA

Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA. Nuclei from three biological replicates were isolated by detergent lysis, fractionated, then three chromatin and three soluble RNA samples were converted to cDNA using Illumina TruSeq stranded pro...

ORGANISM(S): Homo sapiens

2015-03-04 | E-GEOD-66478 | biostudies-arrayexpress

Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA

Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA.

ORGANISM(S): Homo sapiens

2015-03-04 | GSE66478 | GEO

Divergent biochemical fractionation, not convergent temperature, explains cellulose oxygen isotope enrichment across latitudes.

Not available

S-EPMC3221677 | biostudies-literature

Pre-fractionation extends, but creates a bias in the detectable HLA class Ι ligandome

HLA class Ι molecules on the cell surface enable CD8+ T lymphocytes to recognize cellular alterations in the form of antigens, including mutations, protein copy number alterations, aberrant post-translational modifications or pathogen proteins. At any given moment, tens of thousands of different sel...

ORGANISM(S): Homo sapiens (Human)

2019-02-25 | PXD011257 | Pride

Homo sapiens

Biochemical fractionation of HEK293 nuclei and RNA-seq of chromatin-associated and soluble-nuclear RNA

PRJNA277042 | ENA

Cellular fractionation reveals transcriptome responses of human fibroblasts to UV-C irradiation

PRJNA735643 | ENA

Advanced Fractionation of Kraft Lignin by Aqueous Hydrotropic Solutions.

Not available

S-EPMC9867506 | biostudies-literature

Intracellular metabolite levels shape sulfur isotope fractionation during microbial sulfate respiration.

Not available

S-EPMC4280625 | biostudies-literature

Cellular fractionation reveals transcriptome responses of human fibroblasts to UV-C irradiation

The response to DNA damage intersects with many other physiological processes in the cells, including initiation of DNA repair, regulation of transcription and translation, chromatin remodeling, and the cell cycle regulation to contend with the challenge. Transcription shutdown is not simply a conse...

ORGANISM(S): Homo sapiens

2021-06-08 | GSE176258 | GEO

Biochemical fractionation and stable isotope dilution liquid chromatography-mass spectrometry for targeted and microdomain-specific protein quantification in human postmortem brain tissue.

Not available

S-EPMC3518127 | biostudies-literature

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834 Results

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