Biswas M M - OmicsDI

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Unknown (1364)
Proteomics (41)
Transcriptomics (13)
Genomics (5)
Metabolomics (4)

Organisms

Homo sapiens (41)
Mus musculus (10)
Pseudomonas syringae (1)
Lolium perenne (1)
Schizosaccharomyces pombe (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Bombyx mori (1)
Escherichia coli (1)

Repository

pride (36)
biostudies-arrayexpress (18)
MetaboLights (4)
PanoramaPublic (4)
MassIVE (1)

Tissue

Brain (4)
Lung (4)
Blood plasma (3)
Epithelial cell (3)
Lymph node (3)
Cell culture (2)
Nasal lavage fluid (2)
Permanent cell line cell (2)
Blood cell (1)
Cell suspension culture (1)
Dendritic cell (1)
Embryonic stem cell (1)
Epithelium of esophagus (1)
Fibroblast (1)
HeLa cell (1)
Kidney (1)
Liver (1)
MDA-MB-231 cell (1)
Primary neuron (1)
Retina (1)
Squamous epithelial cell (1)
Synovium (1)
Testis (1)
Urine (1)

Disease

COVID-19 (2)
Lung cancer (2)
Non-small cell lung carcinoma (2)
Brain cancer (1)
Chronic myeloid leukemia (1)
Glioblastoma (1)
Head and neck squamous cell carcinoma (1)
Lung adenocarcinoma (1)
Parkinson's disease (1)
Rheumatoid arthritis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (36)
Shotgun proteomics (22)
Bottom-up proteomics (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Top-down proteomics (2)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Orbitrap Eclipse (1)
6540 Q-TOF LC/MS (Agilent) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - (1)

Publication Date

2022 (9)
2025 (8)
2021 (7)
2014 (4)
2010 (4)
2023 (4)
2026 (4)
2015 (3)
2012 (3)
2019 (3)
2018 (2)
2013 (2)
2024 (2)
2020 (2)
2006 (1)
2016 (1)
2017 (1)

CHEBI ID

CHEBI:15929 (3)
CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

Study type

Transcription profiling by array (8)
ChIP-seq (3)
RNA-seq of coding RNA (3)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)

Release Date

2025 (179)
2024 (170)
2022 (163)
2021 (160)
2023 (154)
2020 (118)
2019 (81)
2018 (72)
2017 (58)
2016 (40)
2026 (35)
2015 (33)
2014 (24)
2012 (23)
2013 (21)
2010 (12)
2011 (12)
2008 (6)
2006 (4)
2009 (3)
2007 (3)
2005 (3)
2004 (2)
2003 (2)
2001 (2)
2000 (1)
1999 (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Institute of Bioinformatics , International Technology Park, Bangalore, India (2)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA (1)
Assistant Professor Department of Biochemistry Montreal, Quebec H3G 1Y6 (1)
Biosciences and Bioengineering, IIT Bombay, India (1)
CSIR-Institute of Genomics and Integrative Biology (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Dana Farber Cancer Institute, Boston, MA Harvard Medical School, Boston, MA (1)
Department of Biological Sciences, Bose Institute, Kolkata, West Bengal, 700091, India (1)
Department of Integrated Immunobiology Duke School of Medicine Durham, NC, USA (1)
Department of Ophthalmology and Visual Science, University of Michigan, Ann Arbor, MI, USA Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI, USA (1)
Dept of pathology, Vision research foundation, Chennai, India (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
Functional Proteomics, ICR (1)
Himadri Biswas, Ph. D. Post-doctoral associate, Dept. of Cancer Biology, University of Toledo, Ohio, 43614 (1)
Himadri Biswas, Ph. D. Post-doctoral associate, Dept. of Cancer Biology, University of Toledo, Ohio, 43614, (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
ICR, Functional Proteomics (1)
IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology,Kolkata, India (1)
Institute for Physiological Chemistry Medizinisch-Theoretisches Zentrum MTZ Technical University Dresden Fiedlerstraße 42 D-01307 Dresden (1)
Institute of Bioinformatics 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (1)
Max Planck Institute for Infection Biology, Berlin, Germany (1)
Mol & Med. Pharmacology (1)
PROFESSOR, PI, PROTEOMICS LAB, DEPARTMENT OF BIOSCIENCES AND BIOENGINEERING, IIT BOMBAY (1)
Professor (1)
Proteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai-400076, India. (1)
Proteomics Lab, IIT Bombay (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
THORACIC & GI ONCOLOGY BRANCH, NCI, NIH, Bethesda, MD 20892 (1)
Thoracic and GI Oncology Branch, NCI, NIH (1)

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Optimization of Protoplast Isolation and Transformation for a Pilot Study of Genome Editing in Peanut by Targeting the Allergen Gene Ara h 2.

Not available

S-EPMC8775966 | biostudies-literature

Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.

Not available

S-EPMC5014329 | biostudies-literature

Optimization of Prime Editing in Rice, Peanut, Chickpea, and Cowpea Protoplasts by Restoration of GFP Activity

Not available

S-EPMC9456013 | biostudies-literature

A genetically encoded BRET-based SARS-CoV-2 M^pro protease activity sensor.

Not available

S-EPMC9516532 | biostudies-literature

Transcriptome analysis of human WhartonM-bM-^@M-^Ys jelly stem cells: meta-analysis

Human WhartonM-bM-^@M-^Ys jelly stem cells (hWJSCs) are derived ethically in large amounts from the umbilical cord matrix. Besides their differentiation capabilities, WJSCs also display a notable lack of ability to form teratoma. hWJSCs have been shown to exert immunomodulatory effects and have rece...

ORGANISM(S): Homo sapiens

2010-07-18 | E-GEOD-20125 | biostudies-arrayexpress

Optimization of gene editing in cowpea through protoplast transformation and agroinfiltration by targeting the phytoene desaturase gene.

Not available

S-EPMC10075407 | biostudies-literature

Human serine/threonine protein kinase ATR LC-MS/MS

ATR is a PI3K-like kinase protein, regulating checkpoint responses to DNA damage and replication stress. Apart from its checkpoint function in the nucleus, ATR actively engage in antiapoptotic role at mitochondria following DNA damage. The different functions of ATR in the nucleus and cytoplasm are ...

ORGANISM(S): Homo sapiens (Human)

2022-08-12 | PXD031385 | Pride

Chemical and Electrochemical O₂ Reduction on Earth-Abundant M-N-C Catalysts and Implications for Mediated Electrolysis.

Not available

S-EPMC8833842 | biostudies-literature

NAK-associated protein 1/NAP1 activates TBK1 to ensure accurate mitosis and cytokinesis.

Supporting raw MS data for paper (DOI:10.1083/jcb.202303082) by Paul S. et al., titled "NAK-associated protein 1/NAP1 activates TBK1 to ensure accurate mitosis and cytokinesis". Index of MS supporting files uploaded: - Related to Figure 6A;S4A (AO3556-AO3579: whole proteome (Unimod: 35; 2016; 4)). -...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-11-01 | MSV000093220 | MassIVE

Oncostatin M Improves Cutaneous Wound Re-Epithelialization and Is Deficient under Diabetic Conditions.

Not available

S-EPMC8860865 | biostudies-literature

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