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TranscriptomicsTotal RNA-seq in WT and HIRA KO HeLa cells
We performed total RNA-seq of G1/S-synchronised HeLa cells that are wild-type (WT) or knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene.
ORGANISM(S): Homo sapiens 
2025-08-07 | E-MTAB-14417 | biostudies-arrayexpress
TranscriptomicsChromatin accessibility by ATAC-seq in WT and HIRA KO HeLa cells
We profiled accessibility by ATAC-seq of G1/S-synchronised HeLa cells that are wild-type (WT) or knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene.
ORGANISM(S): Homo sapiens 
2025-08-07 | E-MTAB-14415 | biostudies-arrayexpress
TranscriptomicsHi-C to compare 3D genome organisation in WT to HIRA KO HeLa cells
We performed Hi-C in asynchronous HeLa cells that are wild-type (WT) or knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene.
ORGANISM(S): Homo sapiens 
2025-08-07 | E-MTAB-14433 | biostudies-arrayexpress
TranscriptomicsHi-C to compare 3D genome organisation in HIRA KO HeLa cells rescued with HIRA
We performed Hi-C in asynchronous HeLa cells that knock-out (KO) for the H3.3-specific chaperone HIRA and bear an exogenous H3.1-SNAP and H3.3-SNAP gene transfected with HIRA-YFP (HIRA) or YFP only (control) plasmid.
ORGANISM(S): Homo sapiens 
2025-08-07 | E-MTAB-14431 | biostudies-arrayexpress
TranscriptomicsComparative genomic hybridization of 81 Bordetella pertussis strains
CGH analysis of 81 Bordetella pertussis strains
ORGANISM(S): Bordetella pertussis 
2010-10-01 | E-TABM-814 | biostudies-arrayexpress
ProteomicsR_OM_Metapyo_32_CF_patients_C18_pos
we analyzed the metabolome content by untargeted HPLC/HRMS (see supplementary information). Isolates were first grown in synthetic CF medium 2 (SCFM2), a culture medium designed to mimick the nutritional conditions in CF pulmonary mucus (Turner et al. 2014). Intracellular metabolic extracts of mid-l...
ORGANISM(S): Pseudomonas Aeruginosa (ncbitaxon:287) 
2020-01-10 | MSV000084790 | MassIVE
ProteomicsR_OM_Metapyo_32_CF_patients_HILIC_neg
idem R_OM_Metapyo_32_CF_patients_C18_pos we analyzed the metabolome content by untargeted HPLC/HRMS (see supplementary information). Isolates were first grown in synthetic CF medium 2 (SCFM2), a culture medium designed to mimick the nutritional conditions in CF pulmonary mucus (Turner et al. 2014). ...
ORGANISM(S): Pseudomonas Aeruginosa 
2020-01-10 | MSV000084791 | MassIVE
TranscriptomicsComparative genomic hybridization of Clostridium sporogenes and Clostridium botulinum strains
Clostridium botulinum is a heterogeneous Gram-positive species that comprises four genetically and physiologically distinct groups of bacteria that share the ability to produce botulinum neurotoxin, the most poisonous toxin known to man, and the causative agent of botulism, a severe disease of human...
ORGANISM(S): Clostridium botulinum 
2007-05-23 | E-TABM-264 | biostudies-arrayexpress
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