Blood-resident macrophages

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Unknown (353)
Genomics (149)
Transcriptomics (140)
Other (4)
Proteomics (4)
Metabolomics (2)

Organisms

Mus musculus (110)
Homo sapiens (33)
Ovis aries (3)
Canis lupus familiaris (3)
Rattus norvegicus (3)
Mus musculus musculus (3)
Dictyostelium discoideum AX3 (3)
Mus musculus castaneus (3)
Mus musculus domesticus (3)
Gasterosteus aculeatus (3)
Pseudococcus longispinus (3)
Dactylorhiza (3)
Cervus sp. (3)
Lutra (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SDT1291 (3)
Musa acuminata (3)
Bungarus caeruleus (3)
Castor (3)
Elephantidae (3)
Aeromonas schubertii (3)
Russula atropurpurea (3)
Candida tropicalis (3)
Desulforamulus reducens MI-1 (3)
Ulvophyceae (3)
unclassified Candidatus Omnitrophota (3)
Delonix regia (3)
Epstein-barr virus strain p3hr-1 (3)
Danio rerio (2)
mixed sample (1)
Sus scrofa (1)

Organisms

Mus musculus (85)
Homo sapiens (31)
Canis lupus familiaris (2)
Sus scrofa (2)
Danio rerio (2)
Macaca mulatta (1)
Ovis aries (1)
Rattus norvegicus (1)

Repository

ENA (138)
geo (98)
biostudies-arrayexpress (55)
pride (3)
EGA (2)
MetaboLights (2)
MassIVE (1)

Tissue

Macrophage (2)
Blood (1)
Placenta (1)

Disease

HIV-associated dementia (1)
SS2-infected (1)
Disease free (1)

Technology Type

Mass Spectrometry (3)
Bottom-up proteomics (2)
Mass spectrometry (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
R software (1)
Nf-core pipeline (1)
Illumina DNA Tagmentation (1)
Arcturus PicoPure (1)
Miltenyi Biotec (cat no. 130-096-730) ,Fortessa X-20 flow cytometer (BD Biosciences) (1)
Cell Sorter Aria III or Influx (BD biosciences) (1)
Agilent 2100 Bioanalyzer (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
HFX Orbitrap (1)

Publication Date

2022 (17)
2024 (14)
2020 (14)
2026 (12)
2025 (12)
2018 (11)
2014 (10)
2023 (9)
2021 (9)
2016 (9)
2015 (7)
2017 (6)
2013 (6)
2008 (6)
2012 (5)
2007 (5)
2010 (2)
2009 (2)
2019 (2)
2005 (1)

Metabolite Name

Adefovir Dipivoxil (Preveon, Hepsera) (1)
Indomethacin (Indocid, Indocin) (1)
MLS001148580-01!6ALPHA,9ALPHA-DIFLUOROPREDNISOLONE 21-ACETATE 17-BUTYRATE (1)
Toremifene Citrate (Fareston, Acapodene) (1)
[(1S,7S,8S,8aR)-8-[2-[(2R,4R)-4-hydroxy-6-oxooxan-2-yl]ethyl]-7-methyl-1,2,3,7,8,8a-hexahydronaphthalen-1-yl] (2S)-2-methylbutanoate (1)
(+)-Cycloolivil 4'-O-¦Â-D-glucopyranoside (1)
(+)-Lyoniresinol 2¦Á-O-¦Â-D-glucopyranoside (1)
(-)-Hydroxymatairesinol (1)
(-)-Medicocarpin;Medicarpin 3-O-glucoside (1)
(-)-Pyrifolidine (1)
(-)-Syringaresinol-4-O-¦Â-D-glucopyranoside (1)
(-)-threo-Iso(homo)2-citrate;(-)-threo-1-Hydroxy-1,2,5-pentanetricarboxylic acid;1-Hydroxypentane-1,2,5-tricarboxylate;threo-(Homo)2-isocitrate (1)
(1)Benzopyrano(5,4,3-cde)(1,3)dioxolo(4,5-h)(1)benzopyran-5,11-dione, 1,2,3-trimethoxy- (1)
(1,3-Dihydroxy-6,8a-dimethyl-3-propan-2-yl-1,2,3a,4,5,8-hexahydroazulen-4-yl) 3,4-dimethoxybenzoate (1)
(10-Hydroxy-8,8-dimethyl-2-oxo-9,10-dihydropyrano[2,3-f]chromen-9-yl) (Z)-2-methylbut-2-enoate (1)
(11E)-11-Octadecenoic acid (1R,2S)-2-[[(Z)-9-hexadecenoyl]oxy]-1-methylpropyl ester (1)
(12Z)-9,10,11,14,15,16,17,18,19,20,21,22-Dodecahydro-5,8-ethenobenzo[20]annulene-2,4,6,24-tetrol (1)
(13S)-13-Ethoxy-1,2-dimethoxy-12-methyl-13H-[1,3]benzodioxolo[5,6-c]phenanthridine (1)
(14E)-11-hydroxy-14-(1H-imidazol-5-ylmethylidene)-2-methoxy-9-(2-methylbut-3-en-2-yl)-2,13,16-triazatetracyclo[7.7.0.01,13.03,8]hexadeca-3,5,7-triene-12,15-dione (1)
(14S)-9,20,21,25-Tetramethoxy-15-methyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-1(30),3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,28,31-tetradecaen-2-one (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,33,37-pentahydroxy-18,36-dimethyl-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-9,13,15-trione (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,7,33,37-hexahydroxy-18-methyl-9,13,15-trioxo-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-36-carboxylate (1)
(1E)-4-hydroxy-1-(4-hydroxy-3-methoxyphenyl)dodec-1-en-3-one (1)
(1E,3Z)-buta-1,3-diene-1,2,4-tricarboxylate (1)
(1R)-1-[(4-hydroxyphenyl)methyl]-6-methoxy-2-methyl-1,2,3,4-tetrahydroisoquinolin-2-ium-7-ol (1)
(1R)-1-[[(2S,3R,11bS)-3-ethyl-9,10-dimethoxy-1,2,3,4,5,6,7,11b-octahydrobenzo[a]quinolizin-5-ium-2-yl]methyl]-7-methoxy-1,2,3,4-tetrahydroisoquinolin-2-ium-6-ol (1)
(1R,10R)-5-amino-14-oxido-14-oxo-13,15,18-trioxa-2,4,6,9-tetraza-14lambda5-phosphatetracyclo[8.8.0.03,8.012,17]octadeca-3(8),4-diene-7,11-dione (1)
(1R,14R,24S)-24-Methoxy-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.02,10.04,8.015,23.018,22]pentacosa-2,4(8),9,15(23),16,18(22)-hexaene (1)
(1R,2'S,3'aS,12S,14S)-2',12-dimethylspiro[13-oxa-2,10,17-triazatetracyclo[10.3.2.02,11.04,9]heptadeca-4,6,8,10-tetraene-14,4'-3,3a-dihydro-2H-imidazo[1,2-a]indole]-1',3,16-trione (1)
(1R,2R,5R,8R,9S,10R,11S)-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylate (1)

First Public Date

2025 (21)
2022 (19)
2020 (18)
2024 (14)
2026 (12)
2023 (11)
2021 (10)
2019 (9)
2018 (8)
2017 (7)
2014 (7)
2015 (2)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (13)
RNA-seq of coding RNA from single cells (2)
Cell line - Single-cell sequencing (1)
Baseline (1)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)

Release Date

2023 (42)
2024 (37)
2021 (37)
2022 (35)
2025 (34)
2020 (32)
2016 (29)
2019 (28)
2017 (24)
2018 (22)
2014 (22)
2015 (16)
2013 (10)
2012 (9)
2008 (7)
2026 (5)
2010 (5)
2007 (5)
2009 (3)
2011 (3)
2003 (2)
2005 (1)

Lab affiliation

University of Texas Medical Branch, Galveston, Texas, USA (1)
Professor, Department of Obstetrics and Gynecology, University of South Florida, Tampa, Florida, USA (1)
Proteomics Center, Erasmus MC (1)

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Blood-resident macrophages safeguard blood and vessel integrity

Macrophages are essential in immune defence, tissue development, and disease onset and progression. Their function is in part dictated by their microenvironment and origin. Tissue-resident macrophages originate from yolk sac progenitors, persisting in adult organs and tissues mainly through self-ren...

ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio)

2026-03-11 | PXD052344 | Pride

Blood-resident macrophages

C-Myb+ erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages

Although classified as hematopoietic cells, tissue-resident macrophages are selfrenewing and maintained independently of adult hematopoiesis. While most macrophages originate from embryonic precursors that seed tissues prior to birth, their exact origin is unknown. Using an in utero macrophage deple...

ORGANISM(S): Mus musculus

2015-04-23 | E-GEOD-66970 | biostudies-arrayexpress

Repair-Associated Macrophages Increase after Early-phase Microglia Attenuation to Promote Ischemic Stroke Recovery

Ischemic stroke recovery involves dynamic interactions between the central nervous system and infiltrating immune cells. Peripheral immune cells compete with resident microglia for spatial niches in the brain, but how modulating this balance affects recovery remains unclear. Here, we use PLX5622 ...

2025-02-20 | MTBLS12240 | MetaboLights

Blood vessel-resident macrophages safeguard blood and vessel integrity in zebrafish

PRJNA1260425 | ENA

Organ-specific tissue-resident macrophages dynamics during blood stage malaria

PRJNA476465 | ENA

Single-cell RNA sequencing of self-maintaining lamina propria macrophages

Single-cell RNA sequencing of 697 YFP+ CD64+ lamina propria macrophages isolated from Cx3cr1CreERT2.Rosa26-LSL-YFP mice 35 weeks after tamoxifen administration

ORGANISM(S): Mus musculus

2018-07-30 | E-MTAB-6976 | biostudies-arrayexpress

Homeostatic skin contains two different subsets of resident macrophages with distinct origin and gene profile.

We have found the existence of two independent populations contributing to the skin-resident macrophage pool based on their different origin. We have analyzed their gene profile by deep-sequencing (RNA-Seq). Analysis of RNA-Seq data revealed a differential expression signature between both subsets o...

ORGANISM(S): Mus musculus

2016-07-26 | E-GEOD-50566 | biostudies-arrayexpress

Transcriptome profile of human dermal macrophages and monocyte-derived macrophages

DC, monocyte and macrophage networks are evolutionarily conserved but the distinct subsets have been difficult to distinguish due to shared overlapping phenotypic markers between the cells. Using transcriptome microarray profiling of human and mouse mononuclear phagocyte subsets, we have distinguish...

ORGANISM(S): Homo sapiens

2014-10-15 | E-GEOD-60317 | biostudies-arrayexpress

The transcriptional signature of human ovarian carcinoma macrophages is associated with extracellular matrix reorganization

RNAseq of peritoneal macrophages from patients with non-malignent peritoneal afflictions.

ORGANISM(S): Homo sapiens

2016-09-27 | E-MTAB-4764 | biostudies-arrayexpress

Blood vessel-resident macrophages safeguard blood and vessel integrity in zebrafish

Macrophages are essential in immune defence, tissue development and maintenance, and are involved in disease onset and progression. Their function is influenced by their microenvironment and origin. While tissue-resident macrophages originate from yolk sac progenitors and persist in some adult tissu...

ORGANISM(S): Danio rerio

2026-03-10 | GSE296640 | GEO

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