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ProteomicsIonmob: A Python Package for Prediction of Peptide Collisional Cross-Section Values
Motivation: Including ion mobility separation (IMS) into mass spectrometry proteomics experiments is useful to improve coverage and throughput. Many IMS devices enable linking experimentally derived mobility of an ion to its collisional cross-section (CCS), a highly reproducible physicochemical pro...
ORGANISM(S): Homo Sapiens (human) Mus Musculus (mouse) 
2023-09-21 | PXD043026 | JPOST Repository
TranscriptomicsMolecular Basis of Infrared Detection by Snakes
Snakes possess a unique sensory system for detecting infrared radiation, enabling them to generate a ‘thermal image’ of predators or prey. Infrared signals are initially received by the pit organ, a highly specialized facial structure that is innervated by nerve fibers of the somatosensory system. H...
ORGANISM(S): Pantherophis obsoletus lindheimeri 
2010-03-16 | E-GEOD-19911 | biostudies-arrayexpress
UnknownM#1045: Training Course in Focused Assessment with Sonography for HIV/TB in HIV Prevalent Medical Centers in Malawi.
Not available
S-EPMC6800233 | biostudies-literature
TranscriptomicsCRISPR screen exploring resistance to AKTi (Capivasertib) in ER+ Breast Cancer in MCF7, T47D and CAMA-1 cell lines
A genome-wide CRISPR-Cas9 knockout screen was performed in the breast cancer cell lines T47D, MCF7, and CAMA-1 to identify genes modulating sensitivity and resistance to capivasertib, a selective AKT inhibitor. Cells were transduced with a CRISPR library, followed by treatment with capivasertib or v...
ORGANISM(S): Homo sapiens 
2026-05-25 | E-MTAB-16438 | biostudies-arrayexpress
TranscriptomicsAge-Associated Loss of Lymphatic Vessels Promotes Cardiac Inflammation (sc-RNA-SEQ)
Aging is a major risk factor for cardiovascular diseases, yet the contribution of the lymphatic vasculature to cardiac aging remains largely unexplored. Here, we show that aging reduces lymphatic vessel density in human and mice hearts and induces morphological changes, including the formation of zi...
ORGANISM(S): Mus musculus 
2026-08-14 | E-MTAB-17510 | biostudies-arrayexpress
ProteomicsQCeltis Case Study 3: Dried Blood Spots QC Dataset
A dataset containing dried blood spots from human blood used as quality control samples to monitor variation, used as technical replicates (TR), digestion replicates (DR) and HeLa samples. Dried blood spots are blood from a finger prick spotted onto Whatman cards and dried. An aliquot of pooled, mix...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000095745 | MassIVE
ProteomicsQCeltis Case Study 2: Native Plasma QC Dataset
A dataset containing native plasma samples used as quality control digestion replicates. Samples were automatically processed on i7 automated liquid handling system (Beckman Coulter). Briefly, proteins were extracted and denatured with a buffer composed of TFE (2,2,2-Trifluoroethanol), DTT and ammon...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000095744 | MassIVE
ProteomicsQCeltis Case Study 2: Whole Blood QC Dataset
A dataset containing whole blood samples used as quality control digestion replicates. Samples were automatically processed on i7 automated liquid handling system (Beckman Coulter). Briefly, proteins were extracted and denatured with a buffer composed of TFE (2,2,2-Trifluoroethanol), DTT and ammoniu...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000095743 | MassIVE
ProteomicsQCeltis Case Study 1: Depleted Plasma QC Dataset
A dataset containing depleted plasma samples used as quality control technical replicates (TR) and digestion replicates (DR). Plasma aliquot was shunted to Top14 Abundant Protein Depletion Resin (A36372) based depletion. Depleted plasma samples were processed on a i7 automated liquid handling system...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
MSV000095742 | MassIVE
UnknownA high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response.
Not available
S-EPMC8959399 | biostudies-literature
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