Bodipy - OmicsDI

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Unknown (1030)
Genomics (35)
Transcriptomics (32)
Proteomics (10)
Methylation profiling (1)
Metabolomics (1)

Organisms

Homo sapiens (19)
Mus musculus (9)
Andropogon gerardi (8)
Bacteria (8)
Canis lupus familiaris (8)
Clostridium perfringens (8)
Cnidaria (8)
Cricetulus griseus (8)
Eukaryota (8)
Fasciola (8)
Hepatitis B virus (8)
Human betaherpesvirus 5 (8)
Japanese encephalitis virus group (8)
Madurella mycetomatis (8)
Mesocricetus auratus (8)
Miscanthus x giganteus (8)
Mus musculus (8)
Mycobacterium tuberculosis (8)
Orthoflavivirus (8)
Panicum virgatum (8)
Platyhelminthes (8)
Pseudomonas aeruginosa AES-1R (8)
Rickettsia (8)
Saccharomyces cerevisiae (8)
Chlamydomonas reinhardtii (2)
Schistosoma mansoni (2)
Danio rerio (2)
Mycobacterium tuberculosis str. Erdman = ATCC 35801 (1)
Mycobacterium tuberculosis (1)
Bos taurus (1)

Organisms

Homo sapiens (12)
Mus musculus (8)
Danio rerio (2)
Mycobacterium tuberculosis str. Erdman = ATCC 35801 (1)
Chlamydomonas reinhardtii (1)
Schistosoma mansoni (1)
Bos taurus (1)
Saccharomyces cerevisiae (1)

Repository

ENA (31)
geo (25)
biostudies-arrayexpress (11)
pride (8)
ExpressionAtlas (1)
iProX (1)
MassIVE (1)
MetaboLights (1)

Tissue

Cell culture (1)
Liver (1)
Milk (1)
Plant cell (1)
Root (1)

Disease

Inflammation (1)

Technology Type

Mass Spectrometry (8)
Shotgun proteomics (5)
Bottom-up proteomics (3)
Mass spectrometry (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

TimsTOF Pro 2 (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (8)
2024 (8)
2026 (7)
2023 (5)
2014 (4)
2022 (4)
2015 (3)
2008 (3)
2011 (2)
2016 (1)
2012 (1)
2010 (1)
2018 (1)

Metabolite Name

Adefovir Dipivoxil (Preveon, Hepsera) (1)
Indomethacin (Indocid, Indocin) (1)
MLS001148580-01!6ALPHA,9ALPHA-DIFLUOROPREDNISOLONE 21-ACETATE 17-BUTYRATE (1)
Toremifene Citrate (Fareston, Acapodene) (1)
[(1S,7S,8S,8aR)-8-[2-[(2R,4R)-4-hydroxy-6-oxooxan-2-yl]ethyl]-7-methyl-1,2,3,7,8,8a-hexahydronaphthalen-1-yl] (2S)-2-methylbutanoate (1)
(+)-Cycloolivil 4'-O-¦Â-D-glucopyranoside (1)
(+)-Fasciculic acid B (1)
(+)-Lyoniresinol 2¦Á-O-¦Â-D-glucopyranoside (1)
(-)-Medicocarpin;Medicarpin 3-O-glucoside (1)
(-)-Syringaresinol-4-O-¦Â-D-glucopyranoside (1)
(-)-threo-Iso(homo)2-citrate;(-)-threo-1-Hydroxy-1,2,5-pentanetricarboxylic acid;1-Hydroxypentane-1,2,5-tricarboxylate;threo-(Homo)2-isocitrate (1)
(1)Benzopyrano(5,4,3-cde)(1,3)dioxolo(4,5-h)(1)benzopyran-5,11-dione, 1,2,3-trimethoxy- (1)
(1,3-Dihydroxy-6,8a-dimethyl-3-propan-2-yl-1,2,3a,4,5,8-hexahydroazulen-4-yl) 3,4-dimethoxybenzoate (1)
(10-Hydroxy-8,8-dimethyl-2-oxo-9,10-dihydropyrano[2,3-f]chromen-9-yl) (Z)-2-methylbut-2-enoate (1)
(11E)-11-Octadecenoic acid (1R,2S)-2-[[(Z)-9-hexadecenoyl]oxy]-1-methylpropyl ester (1)
(12Z)-9,10,11,14,15,16,17,18,19,20,21,22-Dodecahydro-5,8-ethenobenzo[20]annulene-2,4,6,24-tetrol (1)
(13S)-13-Ethoxy-1,2-dimethoxy-12-methyl-13H-[1,3]benzodioxolo[5,6-c]phenanthridine (1)
(14E)-11-hydroxy-14-(1H-imidazol-5-ylmethylidene)-2-methoxy-9-(2-methylbut-3-en-2-yl)-2,13,16-triazatetracyclo[7.7.0.01,13.03,8]hexadeca-3,5,7-triene-12,15-dione (1)
(14S)-9,20,21,25-Tetramethoxy-15-methyl-7,23-dioxa-15,30-diazaheptacyclo[22.6.2.23,6.18,12.114,18.027,31.022,33]hexatriaconta-1(30),3(36),4,6(35),8,10,12(34),18,20,22(33),24,26,28,31-tetradecaen-2-one (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,33,37-pentahydroxy-18,36-dimethyl-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-9,13,15-trione (1)
(19E,21E,23E,25E,27E,29E,31E)-17-[7-(4-aminophenyl)-5-hydroxy-4-methyl-7-oxoheptan-2-yl]-1,3,5,7,33,37-hexahydroxy-18-methyl-9,13,15-trioxo-16,39-dioxabicyclo[33.3.1]nonatriaconta-19,21,23,25,27,29,31-heptaene-36-carboxylate (1)
(1E,3Z)-buta-1,3-diene-1,2,4-tricarboxylate (1)
(1R)-1-[(4-hydroxyphenyl)methyl]-6-methoxy-2-methyl-1,2,3,4-tetrahydroisoquinolin-2-ium-7-ol (1)
(1R)-1-[[(2S,3R,11bS)-3-ethyl-9,10-dimethoxy-1,2,3,4,5,6,7,11b-octahydrobenzo[a]quinolizin-5-ium-2-yl]methyl]-7-methoxy-1,2,3,4-tetrahydroisoquinolin-2-ium-6-ol (1)
(1R,10R)-5-amino-14-oxido-14-oxo-13,15,18-trioxa-2,4,6,9-tetraza-14lambda5-phosphatetracyclo[8.8.0.03,8.012,17]octadeca-3(8),4-diene-7,11-dione (1)
(1R,14R,24S)-24-Methoxy-5,7,19,21,25-pentaoxa-13-azahexacyclo[12.11.0.02,10.04,8.015,23.018,22]pentacosa-2,4(8),9,15(23),16,18(22)-hexaene (1)
(1R,2'S,3'aS,12S,14S)-2',12-dimethylspiro[13-oxa-2,10,17-triazatetracyclo[10.3.2.02,11.04,9]heptadeca-4,6,8,10-tetraene-14,4'-3,3a-dihydro-2H-imidazo[1,2-a]indole]-1',3,16-trione (1)
(1R,2R,5R,8R,9S,10R,11S)-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylate (1)
(1R,2R,5S,8S,9S,10R,11R,12R,13S)-5,12,13-trihydroxy-11-methyl-6-methylidene-16-oxo-15-oxapentacyclo[9.3.2.15,8.01,10.02,8]heptadecane-9-carboxylate (1)
(1R,2R,6R,11S,13S,14R,21R)-7,19,23-Triazahexacyclo[9.9.1.11,13.12,6.07,21.014,19]tricosane (1)

First Public Date

2026 (9)
2025 (7)
2024 (3)
2023 (3)
2022 (3)
2014 (2)
2018 (1)
2017 (1)
2015 (1)
2013 (1)

Classification

helminths (1)
bacteria (1)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (2)

Release Date

2025 (124)
2024 (109)
2023 (107)
2022 (106)
2021 (93)
2020 (82)
2019 (69)
2018 (69)
2017 (43)
2015 (39)
2014 (35)
2016 (30)
2013 (28)
2012 (22)
2011 (20)
2026 (16)
2010 (15)
2009 (13)
2008 (10)
2006 (4)
2007 (3)
2004 (1)
2002 (1)
2001 (1)
2000 (1)

Lab affiliation

Department of Physiology, Faculty of Pharmacy, University of Valencia, Burjassot, Valencia, Spain (2)
Department of Chemistry and Bioscience Aalborg University Denmark (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands (1)
Green Biotechnology, Institute of Plant Biology and Biotechnology (IBBP), University of Münster, Münster 48143, Germany (1)
Institute of Chemistry Chinese Academy of Sciences (1)
Proteomics Unit Spanish National Cancer Research Centre (CNIO) Melchor Férnandez Almagro, 3. 28029 Madrid. SPAIN (1)
School of Pharmacy, Sungkyunkwan University, South Korea (1)

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BODIPY-Patatin assay proteomics

The potato protein patatin embeds bioactive peptides that require targeted hydrolysis to be released as promising food additives. This study presents a patatin-specific protease assay for assessing a wide range of protease activities in high-throughput format. Conjugating patatin to the amine reacti...

ORGANISM(S): Solanum tuberosum (Potato)

2025-10-22 | PXD049376 | Pride

Potato Bodipy-fl labeling Q exactive hf Patatin Site-specific modification enrichment

Transcription profiling by array of HeLa cells transfected to express KDELR1 or inclubated with KDEL-Bodipy peptide

HeLa cells transfected to express KDELR1 and HeLa cells incubated with KDEL-Bodipy peptide, Cells were transfected to express KDELR1 for 72 hours, or treated with 1 micromolar KDEL-Bodipy peptide for 6 hours 1 control and 2 treatments

ORGANISM(S): Homo sapiens

2014-09-05 | E-GEOD-48937 | biostudies-arrayexpress

TraSH analysis of Mycobacterium tuberculosis transposon mutants with reduced bodipy-palmitate uptake on the third day of resting bone marrow-derived macrophage infection

PRJNA490182 | ENA

Synthesis of BODIPY FL-tethered ridaifen-B, RID-B-BODIPY, and its localization in cancer cells.

Not available

S-EPMC11377228 | biostudies-literature

Mitochondria-Localized Fluorescent BODIPY-Platinum Conjugate.

Not available

S-EPMC4416427 | biostudies-literature

Mitochondria-targeting biocompatible fluorescent BODIPY probes.

Not available

S-EPMC10966975 | biostudies-literature

BODIPY-BODIPY dyad: assessing the potential as a viscometer for molecular and ionic liquids.

Not available

S-EPMC4381807 | biostudies-literature

Stepwise Polychlorination of 8-Chloro-BODIPY and Regioselective Functionalization of 2,3,5,6,8-Pentachloro-BODIPY.

Not available

S-EPMC4881425 | biostudies-literature

Interaction of BODIPY dyes with bovine serum albumin: a case study on the aggregation of a click-BODIPY dye.

Not available

S-EPMC4908817 | biostudies-literature

TraSH analysis of Mycobacterium tuberculosis transposon mutants with reduced bodipy-palmitate uptake on the third day of resting bone marrow-derived macrophage infection

Mycobacterium tuberculosis transposon mutants with reduced bodipy-palmitate intake on the third day of resting bone marrow-derived macrophage infection are identified by TraSH. Discovery of genetic requirements for fatty acid assimilation by the pathogen is essential for understanding its metabolism...

ORGANISM(S): Mycobacterium tuberculosis Mycobacterium tuberculosis str. Erdman = ATCC 35801

2018-11-30 | GSE119753 | GEO

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