Boer C C - OmicsDI

Show results for

Unknown (1175)
Transcriptomics (89)
Proteomics (32)
Genomics (8)
Models (5)
Metabolomics (2)

Organisms

Homo sapiens (64)
Saccharomyces cerevisiae (18)
Mus musculus (17)
Folsomia candida (7)
Listeria monocytogenes (5)
Enchytraeus crypticus (2)
Collimonas fungivorans (2)
Atta columbica (2)
Heterodera glycines (1)
Collimonas arenae (1)
Solanum tuberosum (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Aspergillus niger NRRL3 (1)
Hansenula polymorpha vector pAM619 (1)
Serratia inhibens PRI-2C (1)
Streptomyces sp. PU10 (1)
Xenopus laevis (1)

Organisms

goat gut metagenome (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (92)
pride (29)
BioModels (5)
ENA (4)
MassIVE (2)
MetaboLights (2)
EGA (1)
geo (1)
PanoramaPublic (1)

Tissue

Cell culture (6)
Blood cell (3)
Bone marrow (3)
Epithelial cell (3)
Heart (3)
B cell (2)
Blood (2)
Blood plasma (2)
Endothelial cell (2)
Seminal vesicle fluid (2)
Blood serum (1)
Bodily fluid (1)
Bone marrow-derived macrophage (1)
Dendritic cell (1)
Early embryonic cell (1)
Egg (1)
Embryo (1)
Embryonic stem cell (1)
Fibroblast (1)
Kidney (1)
Primary cell (1)
Spermatheca (1)
Stem cell (1)
T cell (1)

Disease

Acute leukemia (4)
Breast cancer (2)
High risk B-precurser acute lymphoblastic leukemia (1)
Primary acute lymphoblastic leukemia (1)
Pretreatment primary leukemia (1)
Bacterial infectious disease (1)
Cardiomyopathy (1)
Cardiovascular system disease (1)
Disease free (1)
Hermansky-Pudlak syndrome 2 (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
Data-dependent acquisition (3)
Gel-based experiment (3)
Mass spectrometry (2)
Bottom-up proteomics (2)
Data-independent acquisition (2)
HDMSE (2)
SWATH MS (2)
All-ion fragmentation (1)

Instrument Platform

Generation III Array Scanner [Amersham] (5)
Illumina NovaSeq 6000 (1)
MaXis (1)
Q Exactive (1)
Direct infusion MS - (1)
MS Imaging - (1)
Matrix-assisted laser desorption-ionisation imaging MS - (1)

Publication Date

2008 (21)
2018 (12)
2014 (11)
2011 (10)
2024 (8)
2019 (8)
2015 (8)
2009 (7)
2010 (6)
2007 (6)
2022 (6)
2023 (5)
2013 (4)
2012 (4)
2021 (4)
2005 (3)
2025 (3)
2016 (3)
2003 (1)
2017 (1)
2020 (1)

UNIPROT ID/AC

P01730 (1)

CHEBI ID

CHEBI:15603 (1)
CHEBI:15756 (1)
CHEBI:15783 (1)
CHEBI:16016 (1)
CHEBI:16123 (1)
CHEBI:16414 (1)
CHEBI:16459 (1)
CHEBI:16486 (1)
CHEBI:16545 (1)
CHEBI:16708 (1)
CHEBI:16765 (1)
CHEBI:16850 (1)
CHEBI:17154 (1)
CHEBI:17409 (1)
CHEBI:17418 (1)
CHEBI:17634 (1)
CHEBI:17766 (1)
CHEBI:17878 (1)
CHEBI:18015 (1)
CHEBI:2131 (1)
CHEBI:22652 (1)
CHEBI:2443 (1)
CHEBI:26092 (1)
CHEBI:28716 (1)
CHEBI:28768 (1)
CHEBI:28794 (1)
CHEBI:28875 (1)
CHEBI:30531 (1)
CHEBI:30746 (1)
CHEBI:30813 (1)

Metabolite Name

1,2-Dihydrosantonin (1)
10-Hydroxydecanoic acid (1)
12-Hydroxydodecanoic acid (1)
2,3-Dihydroxycyclopentaneundecanoic acid (1)
2-Hydroxycyclohexan-1-one (1)
2S-Hydroxytetradecanoic acid (1)
4-Methyl-2-oxopentanoate (1)
4-Oxoproline (1)
5-Hydroxypentanoate (1)
5-Methyl-3-isoxazolyl sulfate (1)
5-Valerolactone (1)
6-Oxocineole (1)
9Z-Hexadecenoic acid (1)
Actinidine (1)
Adenine (1)
Aminopyrrolnitrin (1)
Apiole (1)
Ascorbate (1)
Benzoate (1)
Bismuth (1)
Boschnialactone (1)
Coumarin (1)
Cyclohexane-1,3-dione (1)
Cyclopentanone (1)
D-Glucose (1)
Decanoic acid (1)
Glycerone (1)
Hexadecanoic acid (1)
Hydroxylamine hydrochloride (1)
L-Leucine (1)

First Public Date

2024 (1)
2020 (1)
2014 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, School of Molecular and Cellular Biology, University of Leeds, Leeds, United Kingdom, LS2 9JT (1)
Bio-organic chemistry, LIC, Leiden University, Einsteinweg 55, 2333CC, Leiden, The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, The Netherlands and Netherlands Proteomics Center, Utrecht, The Netherlands (1)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (1)
Central Diagnostic Laboratory Maastricht University Medical Centre Maastricht, the Netherlands (1)
Centre for Integrative Bee Research (CIBER) Department of Entomology University of California Riverside, CA 92521 United States of America (1)
Centre for Integrative Bee Research (CIBER) Department of Entomology University of California Riverside, CA 92521United States of America (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (1)
Department of Hematology, Erasmus MC, Rotterdam, the Netherlands (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (lab head) (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, the Netherlands, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
Department of Medical Oncology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. (1)
Department of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands (1)
Department of Pediatric Hematology, Immunology & Infectious Disease, Emma Children’s Hospital, Academic Medical Center (AMC), University of Amsterdam, Amsterdam, The Netherlands (1)
Eco-Biotechnology & Drug Development Group, Laboratory for Microbial Molecular Genetics and Ecology, Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, 11000, Belgrade, Serbia (1)
Experimental Hematology, University Medical Center Groningen, The Netherlands (1)
Institute for Microbiology Department of Microbial Physiology and Molecular Biology University of Greifswald Friedrich-Ludwig-Jahnstr. 15 17489 Greifswald Germany (1)
Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, Lisbon, Portugal (1)
Justus Liebig University Giessen Department of Anatomy and Cell Biology Aulweg 123 35392 Giessen (1)
King's BHF Centre, King's College London, London, UK (1)
Laboratori Institut Josep Carreras (IJC) Ala Sud, Sector 2, Planta 4 Facultat de Medicina Universitat de Barcelona C. Casanova 143 08036 Barcelona (1)
Laboratory of Pediatrics, Section Systems Medicine of Metabolism and Signaling, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands (1)
Medical Oncology University Medical Center Groningen Groningen (1)
Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen Faculty of Health and Medical Sciences Blegdamsvej 3b DK-2200 Copenhagen Denmark (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology,Ghent University (1)
University of Groningen, University Medical Center Groningen, Department of Cardiology, The Netherlands, Hanzeplein 1, 9713 GZ, Groningen, the Netherlands (1)
University of Southern Denmark, Department of Biochemistryand Molecular Biology, Protein Research Group (1)

IsPrivate

False (5)

Submitter Keywords

Immuno-oncology (1)

Study type

Transcription profiling by array (74)
RNA-seq of coding RNA (5)
Unknown experiment type (3)
ChIP-seq (3)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Other (1)

Release Date

2022 (140)
2025 (129)
2024 (120)
2021 (116)
2023 (110)
2020 (95)
2018 (80)
2019 (68)
2015 (61)
2014 (53)
2017 (53)
2012 (45)
2016 (44)
2011 (34)
2013 (30)
2008 (27)
2010 (20)
2026 (14)
2009 (11)
2007 (8)
2003 (4)
2004 (2)
2002 (2)
2006 (1)

Previous page
1 / 132
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 132
Next page

Sort by:

Relevance

Page size

Comparative genomics of Collimonas bacteria

Collimonas is a genus of soil bacteria which comprises three recognized species: C. fungivorans, C. pratensis and C. arenae. The bacteria belonging to this genus share the ability to lyse chitin (chitinolysis) and feed on living fungal hyphae (mycophagy), but they differ in colony morphology, physio...

ORGANISM(S): Collimonas arenae

2011-12-30 | E-MTAB-349 | biostudies-arrayexpress

goat gut metagenome

Boer Hibrida capra Genome sequencing and assembly - C

PRJNA979836 | ENA

Genome-Wide Selective Analysis of Boer Goat to Investigate the Dynamic Heredity Evolution under Different Stages.

Not available

S-EPMC9204547 | biostudies-literature

Temperature-dependent transcriptional response under anaerobic C and N limitations in Yeast

The global transcriptional response of Saccharomyces cerevisiae was investigated in low temperature chemostat cultures grown in carbon or nitrogen limitation. During steady state chemostats, the growth rates and in vivo fluxes were kept constant however the growth-limiting nutrient was significantly...

ORGANISM(S): Saccharomyces cerevisiae

2007-01-20 | E-GEOD-6190 | biostudies-arrayexpress

Reliability, costs, and radiation dose of dual-energy X-ray absorptiometry in diagnosis of radiologic sarcopenia in surgically menopausal women.

Not available

S-EPMC11001834 | biostudies-literature

H3K27me3 in human bladder transitional cell carcinoma cell line CL1207

The H3K27me3 ChIP-seq data for the human bladder transitional cell carcinoma cell line CL1207 were generated in order to detect regions of regional epigenetic silencing in this cell line and test the performance of several peak calling tools: CCAT (Xu et al., 2010) and HMCan (Ashoor et al., "HM...

ORGANISM(S): Homo sapiens

2014-01-07 | E-GEOD-44438 | biostudies-arrayexpress

Genome-wide analysis of poly(I:C)-responsive gene expression by primary human keratinocytes with and without episomal human papillomavirus

Analysis of the effect of high-risk human papillomaviruses HPV16 and HPV18 in keratinocytes at gene expression level. The hypothesis tested in the present study was that HPVs inhibit the function of pathogen recognition receptors (PRRs), thereby evading the immune system. Results show that HPV-posit...

ORGANISM(S): Homo sapiens

2011-03-14 | E-GEOD-21260 | biostudies-arrayexpress

Listening in on a bacterial/fungal dialog: transcriptional profiling of an antagonistic interaction

The genus Collimonas consists of soil bacteria that are well known for their antifungal activity and for mycophagy, i.e. the ability to grow at the expense of living fungi. The aim of the current study was to gain a better understanding of the mechanisms of antagonism of Collimonas bacteria towards ...

ORGANISM(S): Collimonas fungivorans

2011-06-20 | E-MTAB-350 | biostudies-arrayexpress

Identification of a c-MYB-directed therapeutic for acute myeloid leukemia.

Not available

S-EPMC9162920 | biostudies-literature

Isoform specific differences in phospholipase C beta 1 expression in the prefrontal cortex in schizophrenia and suicide.

Not available

S-EPMC5441535 | biostudies-literature

Previous page
1 / 132
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 132
Next page

Sort by:

Relevance

Page size

1312 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Submitter Keywords

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets