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ProteomicsSyntrophic coculture of Syntrophobacter fumaroxidans MPOBT and Geobacter sulfurreducens PCA
Propionate accumulation is an important bottleneck for anaerobic degradation of organic matter. We hypothesized that propionate conversion by a novel coculture of Syntrophobacter fumaroxidans and Geobacter sulfurreducens can be an alternative strategy for propionate oxidation coupled to Fe(III) redu...
ORGANISM(S): Syntrophobacter fumaroxidans MPOB Methanospirillum hungatei JF-1 Geobacter sulfurreducens PCA 
2022-02-17 | PXD027104 | Pride
Proteomics Interspecies electron transfer Propionate Syntrophobacter fumaroxidans Coculture Geobacter sulfurreducens 
ProteomicsMetaproteomics on preterm infant stool
Development of the gut microbiota is greatly impacted in preterm infants. Despite increasing knowledge about microbiota composition in preterm infants, knowledge about the functional signatures of the intestinal microbiota remains limited. The aim was to study transitions in microbiota activity duri...
ORGANISM(S): Bacteria (ncbitaxon:2) Homo Sapiens (ncbitaxon:9606) 
2017-10-17 | MSV000081616 | MassIVE
Proteomics1,2-Propanediol utilization mediated by bacterial microcompartments in Propionibacterium freudenreichii DSM 20271
This study was conducted to investigate whether 1,2-propanediol could be metabolized by Propionibacterium freudenreichii DSM 20271 through bacterial microcompartment mediated metabolism.
ORGANISM(S): Propionibacterium freudenreichii 
2021-03-18 | PXD024700 | Pride
Pdu cluster 1 Propionibacterium freudenreichii Bacterial microcompartments 2-propanediol 
ProteomicsVitamin B12 stimulates 1,2-propanediol utilization in bacterial microcompartments of Listeria monocytogenes making anaerobic growth on rhamnose possible
This study was conducted in order to monitor whether or not Listeria monocytogenes is able to form bacterial microcompartment for rhamnose metabolism by deploying 1,2-propanediol bacterial microcompartment shell proteins and encapsulated enzymes.
ORGANISM(S): Listeria monocytogenes EGD 
2021-06-21 | PXD025734 | Pride
Rhamnose metabolism 1 Bacterial microcompartment 2-propanediol utilization anaerobic growth Listeria monocytogenes 
ProteomicsProteomics investigation into the alkaline pH-driven metabolic plasticity of Lactococcus lactis FM03
This study investigates the proteomic changes underpinning the adaptation mechanisms of Lactococcus lactis subsp. lactis biovar diacetylactis FM03 under alkaline pH.
ORGANISM(S): Lactococcus lactis subsp. lactis bv. diacetylactis 
2025-10-27 | PXD065893 | Pride
Chemostat High ph Metabolic shift Lactic acid bacteria Resource allocation 
ProteomicsEthylene glycol metabolism in Propionibacterium freudenreichii
This study was performed to monitor ethylene glycol metabolism by Propionibacterium freudenreichii and to elucidate the metabolic pathway involved.
ORGANISM(S): Propionibacterium freudenreichii 
2024-08-09 | PXD037369 | Pride
Pdu cluster 1 2-ethanediol Ethylene glycol Propionibacterium freudenreichii Bacterial microcompartments 
ProteomicsProteomic changes of whey proteins after heating at different temperatures
This study was conducted in order to relatively quantify the changes in the native protein profile of whey after heating milk at 65 °C, 70°C, 75°C, 80°C, 85°C for 30 min
ORGANISM(S): Bos taurus (Bovine) 
2020-01-27 | PXD016436 | Pride
Whey protein Proteomics Heat treatment Pasteurization Milk 
ProteomicsProteomic response of Alicycliphilus denitrificans strain BC towards the different electron acceptors chlorate, nitrate and oxygen.
Alicycliphilus denitrificans is a versatile, ubiquitous, facultative anaerobic bacterium. A. denitrificans strain BC can use chlorate, nitrate and oxygen as electron acceptor for growth. Cells display a prolonged lag-phase when transferred from nitrate to chlorate and vice versa. Furthermore, cells ...
ORGANISM(S): Alicycliphilus denitrificans (strain JCM 14587 / BC) 
2013-08-12 | PXD000258 | Pride
Alicycliphilus denitrificans electron acceptors ltq-orbitrap 
ProteomicsProteome-wide adaptation of Lactococcus cremoris during growth in milk and during cheese production and ripening
The enzymatic repertoire of starter cultures is important for cheese characteristics but is challenging to characterize due to the high protein and fat concentration, and the semi-solid state of the cheese matrix. This study aimed to generate a protocol to characterize the proteome of bacteria harve...
ORGANISM(S): Lactococcus lactis subsp. cremoris MG1363 
2025-03-12 | PXD046375 | Pride
Dairy fermentation Cheese production Starter cultures Lactococcus cremoris Protein-rich food matrix Milk 
ProteomicsMembrane protein changes during syntrophic interactions of an archaeal-bacterial coculture.
This study was conducted in order to monitor membrane protein changes based on syntrophic interactions between archaeal-bacterial coculture partners.
ORGANISM(S): Methanococcus maripaludis S2 Desulfovibrio vulgaris str. Hildenborough 
2025-10-15 | PXD064556 | Pride
Intact polar lipids Archaea Membrane changes Methanococcus maripaludis Eukaryogenesis Desulfovibrio vulgaris Syntrophy Membrane lipids 
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