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ModelsBordbar2011_HumanErythrocyte_MetabolicNetwork
This model is from the article: iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states. Bordbar A, Jamshidi N, Palsson BO. BMC Syst Biol. 2011 Jul 12;5...
2005-01-01 | MODEL1106080000 | BioModels
ModelsBordbar2011_MultiTissueType_MetabolicNetwork
This model is from the article: A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. Bordbar A, Feist AM, Usaite-Black R, Woodcock J, Palsson BO, Famili I. BMC Syst Biol. 2011 Oct 31;5(1):180. 22041191 ...
2005-01-01 | MODEL1111070003 | BioModels
ModelsBordbar2011_TissueSpecific-Adipocyte_MetabolicNetwork
This model is from the article: A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. Bordbar A, Feist AM, Usaite-Black R, Woodcock J, Palsson BO, Famili I. BMC Syst Biol. 2011 Oct 31;5(1):180. 22041191...
2005-01-01 | MODEL1111070000 | BioModels
ModelsBordbar2011_TissueSpecific-Hepatocyte_MetabolicNetwork
This model is from the article: A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. Bordbar A, Feist AM, Usaite-Black R, Woodcock J, Palsson BO, Famili I. BMC Syst Biol. 2011 Oct 31;5(1):180. 22041191...
2005-01-01 | MODEL1111070001 | BioModels
ModelsBordbar2011_TissueSpecific-Myocyte_MetablicNetwork
This model is from the article: A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. Bordbar A, Feist AM, Usaite-Black R, Woodcock J, Palsson BO, Famili I. BMC Syst Biol. 2011 Oct 31;5(1):180. 22041191...
2005-01-01 | MODEL1111070002 | BioModels
ModelsBordbar2010_Macrophage_Metabolism
This is the genome scale metabolic reconstruction of the human alveloar macrophage, iAB-AMØ-1410, described in the article: Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Bordbar A, Lewis NE, Schellenberger J, P...
2005-01-01 | MODEL1011090001 | BioModels
ModelsBordbar2010_M_tuberculosis_Macrophage
This is the joined genome scale reconstruction of both Mycobacterium tuberculosis and the human alveloar macrophage metabolism, iAB-AMØ-1410-Mt-661, described in the article: Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. ...
2005-01-01 | MODEL1011090002 | BioModels
TranscriptomicsModel-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation
We used genome-scale modeling and multi-omics (transcriptomics, proteomics, and metabolomics) analysis to assess metabolic features that are critical for macrophage activation. We constructed a genome-scale metabolic network for the RAW 264.7 cell line to determine metabolic modulators of activation...
ORGANISM(S): Mus musculus 
2012-08-02 | E-GEOD-39785 | biostudies-arrayexpress
TranscriptomicsLPS treatment of RAW2647 macrophages
Macrophages are central players in the immune response and manifest divergent phenotypes to control inflammation and innate immunity. Signaling factors are traditionally recognized as the stimuli governing macrophage functions. In recent years, metabolism’s importance has been reemphasized as critic...
ORGANISM(S): Mus musculus 
2012-01-24 | E-GEOD-35237 | biostudies-arrayexpress
TranscriptomicsMinimal metabolic pathway structure is consistent with associated macromolecular interactions.
We sequenced mRNA of three dual perturbation experiments of E. coli K12 MG1655 changing both genetic and environmental conditions. Each dual perturbation experiment consists of four RNA-seq samples (WT, WT+nutrient supplementation, transcription factor KO, transcription factor KO+nutrient supplement...
ORGANISM(S): Escherichia coli K-12 
2014-06-30 | E-GEOD-48324 | biostudies-arrayexpress
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