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TranscriptomicsGene expression profiles in CLL
Evaluation of differential expression between CLL patients in a chemoimmunotherapy trial with age-matched controls 41 CLL tumor samples and 11 age matched controls run on both Affy U133A and U133B chips
ORGANISM(S): Homo sapiens 
2010-07-30 | E-GEOD-22529 | biostudies-arrayexpress
TranscriptomicsTechnical and biological variance structure in mRNA-Seq data
mRNA expression data from next generation sequencing platforms is obtained in the form of counts per gene or exon. Counts are generally assumed to follow a Poisson distribution in which the variance is equal to the mean. However, it is common in observed count data with biological variation for over...
ORGANISM(S): Homo sapiens 
2012-07-16 | E-GEOD-29022 | biostudies-arrayexpress
TranscriptomicsDeep Sequence Analysis of the Relationship between Gene Expression, CpG Island Methylation, and Gene Copy Number in Breast Cancer Cells
We used deep sequencinge technology to profile the transcriptome, gene copy number, and CpG island methylation status simultaneously in eight commonly used breast cell lines to develop a model for how these genomic features are integrated in estrogen receptor positive (ER+) and negative breast cance...
ORGANISM(S): Homo sapiens 
2011-03-16 | E-GEOD-27003 | biostudies-arrayexpress
TranscriptomicsEvaluation of a New High-Dimensional miRNA Profiling Platform
We evaluated a new miRNA profiling platform that utilizes Illumina’s existing robust DASL chemistry as the basis for the assay. Using total RNA from five colon cancer patients and four cell lines, we evaluated the reproducibility of miRNA expression levels across replicates and with varying amoun...
ORGANISM(S): Homo sapiens 
2010-06-24 | E-GEOD-17346 | biostudies-arrayexpress
ProteomicsProtein Turnover Rates in Normal and Hypertrophy Mouse Hearts
This dataset contains the in vivo turnover rate information of ~3,000 proteins from the mouse heart. Data from six common laboratory mouse strains with differential responses to isoproterenol are included
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2017-11-08 | MSV000081697 | MassIVE
ProteomicsM.musculus - Heart, NSAF (Lauetal,scidata2016)
abundance based on NSAF, Interaction consistency score: 38.1, Coverage: 31
ORGANISM(S): 10090 
2016-00-00 | 1153777653 | PAXDB
TranscriptomicsGene expression patterns within cell lines are predictive of chemosensitivity
We generated RNA's and measured expression of 40000 genes using spotted cDNA microarrays from the fifty nine publicly available cell lines of the NCI Developmental Therapeutics Program's NCI60 studies and an additional set of seven cell lines for which GI50 compound sensitivity data were available. ...
ORGANISM(S): Homo sapiens 
2008-02-07 | E-GEOD-7947 | biostudies-arrayexpress
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