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Transcriptomics (567)
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Homo sapiens (280)
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Organisms

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Repository

biostudies-arrayexpress (567)
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Tissue

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Disease

Cardiovascular system disease (1)
Ehlers-Danlos syndrome classic type 1 (1)

Technology Type

Mass Spectrometry (68)
Shotgun proteomics (44)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (8)
Mass spectrometry (7)
Gel-based experiment (5)
Top-down proteomics (4)
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Instrument Platform

Illumina HiSeq 2500 (8)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (3)
ArrayWoRx Biochip Reader [Applied Precision] (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
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Agilent G2505B Scanner (1)
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Illumina NovaSeq 6000 (1)
LTQ Orbitrap Elite (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2005 (157)
2010 (119)
2006 (105)
2012 (39)
2007 (32)
2008 (29)
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2011 (14)
2023 (14)
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2002 (10)
2025 (9)
2022 (7)
2015 (7)
2018 (7)
2024 (6)
2026 (5)
2017 (3)
2001 (2)
2014 (1)
2003 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433S_MOUSE (1)
1433T_MOUSE (1)
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2ABA_MOUSE (1)
2ABB_MOUSE (1)
2ABD_MOUSE (1)
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41_MOUSE (1)
4EBP1_MOUSE (1)
4F2_MOUSE (1)
5NT1A_MOUSE (1)
5NT3A_MOUSE (1)
5NT3B_MOUSE (1)
5NTC_MOUSE (1)
5NTD_MOUSE (1)
6PGD_MOUSE (1)

CHEBI ID

CHEBI:16414 (3)
CHEBI:17015 (3)
CHEBI:17895 (3)
CHEBI:27897 (3)
CHEBI:30769 (3)
CHEBI:132244 (2)
CHEBI:138644 (2)
CHEBI:15756 (2)
CHEBI:15760 (2)
CHEBI:15929 (2)
CHEBI:16015 (2)
CHEBI:14314 (1)
CHEBI:15422 (1)
CHEBI:15721 (1)
CHEBI:16108 (1)
CHEBI:16332 (1)
CHEBI:16474 (1)
CHEBI:16526 (1)
CHEBI:16761 (1)
CHEBI:17138 (1)
CHEBI:17363 (1)
CHEBI:17797 (1)
CHEBI:17969 (1)
CHEBI:18009 (1)
CHEBI:18367 (1)
CHEBI:24636 (1)
CHEBI:28013 (1)
CHEBI:48153 (1)
CHEBI:57634 (1)
CHEBI:58601 (1)

Metabolite Name

Aspartic acid (2)
Esculetin (2)
Quinic acid (2)
Succinic acid (2)
(+)-Syringaresinol O-beta-D-glucoside (1)
(+)-secoisolariciresinol diglucoside (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-D-glucoside (1)
(-)-Columbianetin (1)
(-)-Epigallocatechin 3-gallate 7-glucoside 4"-glucuronide (1)
(-)-Jasmonic acid (1)
(-)-epicatechin (1)
(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate (1)
(2S)-2-Butanol O-[b-D-Apiofuranosyl-(1->6)-b-D-glucopyranoside] (1)
(2S)-2-hydroxybutanedioic acid (1)
(2b,3b)-Dihydroxy-30-nor-12,20(29)-oleanadiene-28-glucopyranosyloxy-23-oic acid 3-glucuronide (1)
(6Z,9Z,12Z)-Octadecatrienoic acid (1)
(7'R)-(+)-Lyoniresinol 9'-glucoside (1)
(9R,10R)-Dihydroxyoctadecanoic acid (1)
(9Z)-(7S,8S)-Dihydroxyoctadecenoic acid (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Octadecenoic acid (1)
(9Z,12Z)-(8R)-Hydroxyoctadeca-9,12-dienoic acid (1)
(E)-Ferulic acid (1)
(E)-p-coumaric acid, 4-Hydroxycinnamic acid (1)
(R)-(Homo)3-citrate (1)
(R)-1-O-[b-D-Glucopyranosyl-(1->6)-b-D-glucopyranoside]-1,3-octanediol (1)
(R)-5-Phosphomevalonate (1)
(S)-Malate (1)
(S)-Multifidol 2-[apiosyl-(1->6)-glucoside] (1)
(Z)-Resveratrol 3,4-diglucoside (1)

First Public Date

2026 (1)
2020 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
Cryobiofrontier Research Center, Iwate University, Japan (2)
Department of Biological Sciences, University of Alberta (2)
FeROS, BPMP, INRA (2)
Mendel University in Brno (2)
(1) Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium; (2) VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium. (1)
AG Willmitzer, Max Planck Institute of Molecular Plants Physiology, Potsdam-Golm, Germany (1)
Agriculture and Agri-Food Canada, Canada (1)
Agriculture and Agri-Food Canada, Ottawa Research and Development Centre. (1)
Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Auburn University, Alabama (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biochemistry and Metabolism Department John Innes Centre Norwich Research Park Norwich, UK (1)
Biochemistry and Metabolism Department John Innes Centre Norwich UK (1)
CGSI - University of Wisconsin Madison. Sussman lab. (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal (1)
Center for Research in Agricultural Genomics (CRAG), Spain (1)
College of Life Science, Capital Normal University. (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Biology, Henan University, Kaifeng 475001, The Peoples Republic of China. (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. (1)
Department of Plant Sciences Rothamsted Research West Common Harpenden AL5 2JQ UK (1)
Department of Plant Systems Biology University of Hohenheim 70593 Stuttgart (1)
Director, Institute for Tissue Engineering and Regenerative Medicine (iTERM) Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg Germany (1)
Division of Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Staudtstraße 5, 91058 Erlangen (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, 9052 Ghent, Belgium (1)
Hangshan Univerisity (1)

IsPrivate

False (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)

Study type

Unknown experiment type (308)
Transcription profiling by array (205)
Other (18)
Comparative genomic hybridization by array (17)
RNA-seq of coding RNA (16)
Plant - High-throughput sequencing (1)
RIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2005 (157)
2010 (122)
2006 (107)
2021 (42)
2012 (42)
2022 (40)
2020 (38)
2024 (37)
2023 (36)
2025 (34)
2007 (31)
2016 (30)
2008 (29)
2018 (21)
2013 (20)
2017 (19)
2011 (17)
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2015 (16)
2009 (15)
2002 (10)
2014 (7)
2026 (6)
2001 (2)
2003 (1)

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Infection of bone marrow derived macrophages with M. tuberculosis CDC1551

I infected 8 flasks of resting murine bone marrow derived macrophages with M. tuberculosis CDC1551. Individual samples of intracellular Mtb were collected at 2hr, and days 2,4,6,8,10,12, and 14 post-infection using the GTC (guanidine thiocyanate) method as previously published. A 2hr "no macr...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2012-07-11 | E-GEOD-35362 | biostudies-arrayexpress

Gene expression profiles of M. tuberculosis constitutively expressing the transcriptional regulator DosR (Rv3133c).

Background: Conflicting results have been reported about the role of the two-component sensor and transcriptional regulator DosS/DosR, controlling the expression of the dormancy DosR regulon, for in vivo virulence of M. tuberculosis. Here, we have used a new approach to further analyze the relevance...

ORGANISM(S): Mycobacterium tuberculosis

2012-06-12 | E-GEOD-19838 | biostudies-arrayexpress

System-wide analysis of short-term response to high temperature in Pinus radiata

Pinus radiata seedlings, the most widely planted pine species in the world, were exposed to temperatures within a range mimicking future scenarios based on current models of heat increase. The short-term heat response in P. radiata was studied in detail by exploring the metabolo...

2023-08-14 | MTBLS4567 | MetaboLights

Secreted and membrane-associated genes

Large-scale identification of secreted and membrane-associated gene products using DNA microarrays. This study is described more fully in Diehn M et al.(2000) Nat Genet 25:58-62

ORGANISM(S): Homo sapiens

2002-06-27 | E-GEOD-48 | biostudies-arrayexpress

An Interpretable Planning Bot for Pancreas Stereotactic Body Radiation Therapy.

Not available

S-EPMC7902297 | biostudies-literature

Biohybrid valveless pump-bot powered by engineered skeletal muscle.

Not available

S-EPMC6358718 | biostudies-literature

DNA-BOT: a low-cost, automated DNA assembly platform for synthetic biology.

Not available

S-EPMC7476404 | biostudies-literature

Technical and biological variance structure in mRNA-Seq data

mRNA expression data from next generation sequencing platforms is obtained in the form of counts per gene or exon. Counts are generally assumed to follow a Poisson distribution in which the variance is equal to the mean. However, it is common in observed count data with biological variation for over...

ORGANISM(S): Homo sapiens

2012-07-16 | E-GEOD-29022 | biostudies-arrayexpress

In silico fragment-based discovery of CIB1-directed anti-tumor agents by FRASE-bot.

Not available

S-EPMC11219766 | biostudies-literature

Breast cancer endothelial interaction

MATERIALS AND METHODS: The genomic effects of tumor-endothelial interactions in cancer are not yet well characterized. To study this interaction in breast cancer, we set up an ex vivo coculture model with human benign and malignant breast epithelial cells with endothelial cells to determine the asso...

ORGANISM(S): Homo sapiens

2010-02-17 | E-GEOD-20364 | biostudies-arrayexpress

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