Boundary - OmicsDI

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UNIPROT ID/AC

P07207 (1)
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CHEBI ID

CHEBI:25094 (4)
CHEBI:18237 (4)
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CHEBI:78320 (2)
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CHEBI:18021 (1)

Metabolite Name

Leucine (2)
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TAG 60:7 (1)
TAG 60:6 (1)
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Modelling Approach

Ordinary differential equation model (8)
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Study status

Recruiting (2)

Lab affiliation

Department of Immunobiology, University of Lausanne, Epalinges, Switzerland (3)
Washington University in St. Louis (3)
Department of Proteomics and Signal Transduction, Systems Biology of Membrane Trafficking Research Group, Max-Planck Institute of Biochemistry, Martinsried, Germany (2)
Discovery Proteomics Facility, University of Oxford (2)
2Division of Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin-Madison, Madison, Madison, WI 53705, USA (1)
Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Bioanalytical Mass Spectrometry Group Max Planck Institute for Multidisciplinary Sciences Germany Bioanalytics Institute for Clinical Chemistry University Medical Center Goettingen Germany (1)
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Cell Biology Harvard Medical School USA (1)
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Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (1)
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Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Director Stony Brook Cancer Center (1)
Discovery Proteomics Lab, University of Oxford (1)
Ghent University Department of Biochemistry B-9000 Ghent Belgium (1)
Gregor Mendel Institute of Molecular Plant Biology GmbH Dr. Bohr-Gasse 3, 1030 Vienna, Austria Phone: +43 1 79044 9850 http://www.gmi.oeaw.ac.at (1)
Guangdong Provincial Key Laboratory of Regional Immunity and Diseases, Shenzhen Key Laboratory of Translational Medicine of Tumor, International Cancer Center, Department of Cell Biology and Genetics, School of Medicine, Shenzhen University, Shenzhen, 518055, China. (1)
Head of MRC LMS proteomics core (1)
Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Bonn, Germany (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Jožef Stefan Institute, Department of Biochemistry and Molecular and Structural Biology, Jamova cesta 39, 1000 Ljubljana, Slovenia Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins (CIPKeBiP), Jamova cesta 39, 1000 Ljubljana, Slovenia (1)
Lab. of Bioengineering, Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletiya Street, Vladivostok, 690022, Russia (1)

IsPrivate

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Submitter Keywords

Machine Learning Model (1)
Immuno-oncology (1)

Classification

protozoa (11)
bacteria (2)
viruses (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

RNA-seq of coding RNA (300)
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Hi-C (1)

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Location

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Analysis of M.xanthus boundary by nano-LC-MS/MS

Investigation of different proteins that play role in the formation of boundary between DK1622 and the incompatible mutant strain via proteomics approach.

ORGANISM(S): Myxococcus xanthus DK 1622

2019-11-13 | PXD012532 | Pride

Determinants of chromosome organization: Loop extrusion or boundary:boundary pairing?

PRJNA924678 | ENA

RNA-sequencing with micro-dissected boundary organoid into anterior, posterior, and boundary regions

PRJNA498598 | ENA

Structural variation at the pseudoautosomal boundary.

PRJEB32179 | ENA

Array CGH of Drosophila translocations on heterochromatin custom array-eu_het boundary.

CGH analysis of translocations with breakpoints at the euchromatin/heterochromatin boundary. Three translocations with breakpoint at the euchromatin/heterochromatin boundary of 2L, 3L and X, respectively, were analyzed by CGH to distinguish heterochromatic sequences from euchromatic sequences. X: 10...

ORGANISM(S): Drosophila melanogaster

2012-03-06 | E-GEOD-36261 | biostudies-arrayexpress

Arabidopsis thaliana strain:Landsberg erecta Transcriptome or Gene expression

To study cell type-specific gene expression in the leaf boundary region in the genome scale, we employed the TRAP-seq approach recently implemented. In brief, we introduced a reporter line carrying the fusion of the large subunit ribosomal protein L18 with N-terminal His and FLAG epitope tags (HF-RP...

ORGANISM(S): Arabidopsis thaliana

2015-02-07 | E-MTAB-4423 | biostudies-arrayexpress

Essential role of Cp190 in physical and regulatory boundary formation in Drosophila

Animal genomes fold into contact domains defined by enhanced internal contact frequencies with debated functions in establishing independent gene regulatory domains. A large fraction of contact domains in mammals are formed by stalling of chromosomal loop-extruding cohesin by CTCF at domain boundari...

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2022-05-30 | PXD027795 | Pride

Genome architecture Development Drosophila

A Note on Scalar-Gradient Sharpening in the Stable Atmospheric Boundary Layer.

Not available

S-EPMC7242271 | biostudies-literature

Transcription and Cohesin Direct Genome Positioning and Domain Boundary Plasticity

PRJNA1107477 | ENA

Transcriptome analysis of genes regulated by CUP-SHAPED COTYLEDON1 (CUC1) transcription factor in Arabidopsis thaliana

Samples 1 & 2: Comparison of gene expression between wild type (ecotype Ler) and 35S:CUC1, in which CUP-SHAPED COTYLEDON1, a master regulator of the shoot meristem and boundary establishment, is constitutively expressed under the cauliflower mosaic virus 35S promoter. Samples 3 & 4: Comparison of ge...

ORGANISM(S): Arabidopsis thaliana

2011-03-30 | E-GEOD-27482 | biostudies-arrayexpress

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