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While rapid progress has been made to characterize the bacterial and archaeal populations of the rumen microbiome, insight into how they interact with keystone protozoal species remains elusive. Here, we reveal two distinct rumen community types (RCT-A and RCT-B) that are not strongly associated ...

2025-06-11 | MTBLS12283 | MetaboLights

From an animal production and health perspective, our understanding of the metabolites in ruminant biofluids, particularly rumen fluid across different host species is poorly understood. Metabolomics is a powerful and sensitive approach for investigating low molecular weight metabolite profiles p...

2021-08-23 | MTBLS1717 | MetaboLights
We evaluated the effects of pure glyphosate and the formulations Durano TF and Roundup® LB plus in different concentrations on rumen microbiota bioreactor model using the Rumen Simulation Technique (RUSITEC). Application of the compounds in three concentrations (0.1 mg/L, 1.0 mg/L or 10 mg/L, n = 4 ...
ORGANISM(S): Bos taurus (Bovine) 
2022-05-08 | PXD032166 | Pride
This project describes the development, optimization, and evaluation of a streamlined and scalable metaproteomic workflow for the functional characterization of the rumen microbiome. Rumen samples represent a highly complex biological matrix, and existing metaproteomic protocols are often labor-inte...
ORGANISM(S): Bos taurus (Bovine) 
2026-08-05 | PXD078749 | Pride
Four mature, non-lactating dairy cattle were transitioned from a high forage diet (HF; 0% grain) to a high grain diet (HG; 65% grain) that was fed for three weeks. Rumen papillae biopsies were performed during the HF baseline (week 0) and after the first (week 1) and third week (week 3) of the grai...
ORGANISM(S): Bos taurus 
The arsenal of genes that microbes express reflect the way in which they sense their environment. We have previously reported that the rumen microbiome composition and its coding capacity are different in animals having distinct feed efficiency states, even when fed an identical diet. Here, we revea...
ORGANISM(S): Bos taurus (Bovine) 
2022-08-25 | PXD033418 | Pride
Hong2004 - Genome-scale metabolic network of Mannheimia succiniciproducens (iSH335) This model is described in the article: The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens. Hong SH, Kim JS, Lee SY, In YH, Choi SS, Rih JK, Kim CH, Jeong H, Hur...
2015-07-30 | MODEL1507180025 | BioModels
Rumen Metagenome
Raw LC-MSMS data from the Plos One publication: "Novel Reusable Animal Model for Comparative Evaluation of In vivo Growth and Protein-Expression of Escherichia coli O157 strains in the Bovine Rumen" Represents 2 LC-MSMS runs L (lactation diet) and M (maintenance diet) in 10 fractions each. Each run...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2022-04-07 | MSV000089218 | MassIVE
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